Variant report

Variant	rs56083792
Chromosome Location	chr10:61361445-61361446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10509110	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826322	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826323	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006576	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11006585	0.99[ASN][1000 genomes]
rs11006595	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006597	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006600	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11006608	0.89[ASN][1000 genomes]
rs11598299	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11815662	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11819306	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11819752	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12415404	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12416613	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16913818	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913821	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913829	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1909635	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909638	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393559	0.84[AMR][1000 genomes]
rs35710625	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3956825	0.92[ASN][1000 genomes]
rs4519044	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948235	0.87[ASN][1000 genomes]
rs4948343	0.89[ASN][1000 genomes]
rs4948344	0.89[ASN][1000 genomes]
rs55957619	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077944	0.87[ASN][1000 genomes]
rs7914581	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7918255	0.82[AMR][1000 genomes]
rs7918394	0.84[AMR][1000 genomes]
rs7919042	0.84[AMR][1000 genomes]
rs7921200	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922399	0.84[AMR][1000 genomes]
rs884665	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv437684	chr10:61354446-61367720	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437683	chr10:61354446-61369980	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1049492	chr10:61357609-61368880	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv521848	chr10:61358382-61363824	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1807715	chr10:61358382-61364804	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1808482	chr10:61358382-61365105	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1811958	chr10:61358382-61365105	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv818772	chr10:61358382-61365105	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv437118	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv437119	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv467290	chr10:61358382-61378404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv467291	chr10:61358382-61378404	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv551151	chr10:61358382-61378404	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv3318129	chr10:61359946-61364744	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3393279	chr10:61361196-61365994	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv821391	chr10:61361337-61365129	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61355600-61366800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:61361000-61362000	Enhancers	Placenta	Placenta

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