Variant report

Variant	rs11006576
Chromosome Location	chr10:61322015-61322016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509110	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10826322	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826323	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11006585	0.99[ASN][1000 genomes]
rs11006590	0.85[CHB][hapmap]
rs11006595	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11006597	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11006608	0.88[ASN][1000 genomes]
rs11598299	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11815662	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11819306	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11819752	0.91[ASN][1000 genomes]
rs16913818	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16913821	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1909635	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1909638	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3956825	0.90[ASN][1000 genomes]
rs4519044	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948235	0.90[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4948343	0.88[ASN][1000 genomes]
rs4948344	0.88[ASN][1000 genomes]
rs55957619	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56083792	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7077944	0.86[ASN][1000 genomes]
rs7914581	0.91[ASN][1000 genomes]
rs7921200	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs884665	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3693063	chr10:61316344-61331087	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61317600-61324000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:61319600-61322200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:61320600-61322400	Enhancers	Colon Smooth Muscle	Colon
4	chr10:61320800-61322200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:61320800-61322200	Enhancers	Osteobl	bone
6	chr10:61320800-61322600	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:61321000-61322400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:61321000-61322400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:61321600-61322600	Enhancers	HSMMtube	muscle
10	chr10:61321600-61324200	Enhancers	NHDF-Ad	bronchial
11	chr10:61321800-61322600	Enhancers	Rectal Smooth Muscle	rectum
12	chr10:61321800-61323200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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