Variant report

Variant	rs1909635
Chromosome Location	chr10:61348668-61348669
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr10:61348553-61348962	A549	lung:	n/a	n/a
2	GABPA	chr10:61348543-61348981	MCF-7	breast:	n/a	n/a
3	GABPA	chr10:61348599-61348819	Hela-S3	cervix:	n/a	n/a
4	GABPA	chr10:61348524-61348937	SK-N-SH	brain:	n/a	n/a
5	GABPA	chr10:61348581-61348886	A549	lung:	n/a	n/a
6	GABPA	chr10:61348496-61348950	SK-N-SH	brain:	n/a	n/a
7	YY1	chr10:61348644-61348860	SK-N-SH_RA	brain:	n/a	n/a
8	GABPA	chr10:61348665-61348799	GM12878	blood:	n/a	n/a
9	GABPA	chr10:61348549-61348811	K562	blood:	n/a	n/a
10	GABPA	chr10:61348402-61348794	K562	blood:	n/a	n/a
11	HCFC1	chr10:61348662-61348832	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000235140	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10509110	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826322	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826323	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006576	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11006585	0.99[ASN][1000 genomes]
rs11006595	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006597	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006600	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11006608	0.89[ASN][1000 genomes]
rs11598299	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11815662	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11819306	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11819752	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12415404	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12416613	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16913818	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913821	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913829	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1909638	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35710625	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3956825	0.92[ASN][1000 genomes]
rs4519044	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948235	0.87[ASN][1000 genomes]
rs4948343	0.89[ASN][1000 genomes]
rs4948344	0.89[ASN][1000 genomes]
rs55957619	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083792	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077944	0.87[ASN][1000 genomes]
rs7914581	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7921200	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884665	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
2	chr10:61345600-61349200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:61347800-61349400	Weak transcription	NHEK	skin
5	chr10:61348400-61351200	Weak transcription	Rectal Mucosa Donor 31	rectum

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