Variant report
| Variant | rs3956825 |
|---|---|
| Chromosome Location | chr10:61377003-61377004 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10509110 | 0.92[ASN][1000 genomes] |
| rs10826322 | 0.92[ASN][1000 genomes] |
| rs10826323 | 0.92[ASN][1000 genomes] |
| rs11006576 | 0.90[ASN][1000 genomes] |
| rs11006585 | 0.92[ASN][1000 genomes] |
| rs11006595 | 0.92[ASN][1000 genomes] |
| rs11006597 | 0.92[ASN][1000 genomes] |
| rs11006608 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11598299 | 0.91[ASN][1000 genomes] |
| rs11815662 | 0.97[ASN][1000 genomes] |
| rs11819306 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11819752 | 0.84[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16913818 | 0.92[ASN][1000 genomes] |
| rs16913821 | 0.92[ASN][1000 genomes] |
| rs1909635 | 0.92[ASN][1000 genomes] |
| rs1909638 | 0.92[ASN][1000 genomes] |
| rs4519044 | 0.92[ASN][1000 genomes] |
| rs4948235 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4948343 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4948344 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs55957619 | 0.92[ASN][1000 genomes] |
| rs56083792 | 0.92[ASN][1000 genomes] |
| rs7077944 | 0.95[ASN][1000 genomes] |
| rs7914581 | 0.90[ASN][1000 genomes] |
| rs7921200 | 0.92[ASN][1000 genomes] |
| rs884665 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895565 | chr10:61347537-61379398 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv895566 | chr10:61350192-61379398 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv467290 | chr10:61358382-61378404 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv467291 | chr10:61358382-61378404 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv551151 | chr10:61358382-61378404 | Weak transcription Flanking Active TSS Enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61374200-61377600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr10:61377000-61377800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
