Variant report

Variant	rs4948235
Chromosome Location	chr10:61385731-61385732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61385534..61386350-chr10:61435382..61436157,3	MCF-7	breast:
2	chr10:61385561..61386360-chr10:61807217..61808561,4	MCF-7	breast:
3	chr10:61385465..61386426-chr10:61590065..61591016,3	K562	blood:
4	chr10:61385364..61387560-chr10:61565136..61567450,2	K562	blood:
5	chr10:61385518..61386497-chr10:61568741..61570237,8	MCF-7	breast:
6	chr10:61385493..61386429-chr10:61568847..61570051,6	K562	blood:
7	chr10:61385304..61386956-chr10:61564007..61565595,5	MCF-7	breast:
8	chr10:61384437..61387120-chr10:61801468..61804308,2	K562	blood:
9	chr10:61385405..61386688-chr10:61568618..61569756,12	MCF-7	breast:
10	chr10:61385698..61386475-chr10:61590149..61590729,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC16A9-2	chr10:61385196-61389087	ucscGeneNc_uc009xoz_1

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509110	0.87[ASN][1000 genomes]
rs10826322	0.87[ASN][1000 genomes]
rs10826323	0.87[ASN][1000 genomes]
rs11006576	0.86[ASN][1000 genomes]
rs11006585	0.87[ASN][1000 genomes]
rs11006590	0.81[CHB][hapmap]
rs11006595	0.87[ASN][1000 genomes]
rs11006597	0.87[ASN][1000 genomes]
rs11006608	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11598299	0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs11815662	0.92[ASN][1000 genomes]
rs11819306	0.93[ASN][1000 genomes]
rs11819752	0.93[ASN][1000 genomes]
rs16913818	0.87[ASN][1000 genomes]
rs16913821	0.87[ASN][1000 genomes]
rs1909635	0.87[ASN][1000 genomes]
rs1909638	0.87[ASN][1000 genomes]
rs3956825	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4519044	0.87[ASN][1000 genomes]
rs4948343	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948344	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55957619	0.87[ASN][1000 genomes]
rs56083792	0.87[ASN][1000 genomes]
rs7077944	0.94[ASN][1000 genomes]
rs7914581	0.85[ASN][1000 genomes]
rs7921200	0.87[ASN][1000 genomes]
rs884665	0.83[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61382600-61385800	Weak transcription	Fetal Heart	heart
2	chr10:61382800-61386000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:61384400-61386800	Weak transcription	HMEC	breast
4	chr10:61385200-61386600	Enhancers	Fetal Stomach	stomach
5	chr10:61385400-61385800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:61385400-61386000	Active TSS	Fetal Brain Male	brain
7	chr10:61385400-61386200	Enhancers	Brain Angular Gyrus	brain
8	chr10:61385400-61386400	Enhancers	Brain Hippocampus Middle	brain
9	chr10:61385400-61386400	Enhancers	Fetal Brain Female	brain
10	chr10:61385400-61386400	Enhancers	Fetal Lung	lung
11	chr10:61385400-61386400	Enhancers	Stomach Mucosa	stomach
12	chr10:61385400-61386600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr10:61385600-61385800	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr10:61385600-61385800	Enhancers	Brain Cingulate Gyrus	brain
15	chr10:61385600-61385800	Flanking Active TSS	NHDF-Ad	bronchial
16	chr10:61385600-61386000	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr10:61385600-61386200	Enhancers	Colon Smooth Muscle	Colon
18	chr10:61385600-61386400	Enhancers	Duodenum Mucosa	Duodenum
19	chr10:61385600-61386400	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr10:61385600-61386600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:61385600-61386800	Enhancers	Brain Germinal Matrix	brain
22	chr10:61385600-61387000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:61385600-61387200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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