Variant report

Variant	rs11598299
Chromosome Location	chr10:61347537-61347538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10509110	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10826322	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10826323	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11006576	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11006585	0.98[ASN][1000 genomes]
rs11006590	0.86[CHB][hapmap]
rs11006595	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11006597	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11006600	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11006608	0.88[ASN][1000 genomes]
rs11815662	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11819306	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11819752	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12415404	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12416613	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16913818	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16913821	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16913829	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1909635	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1909638	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35710625	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3956825	0.91[ASN][1000 genomes]
rs4519044	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948235	0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4948343	0.88[ASN][1000 genomes]
rs4948344	0.88[ASN][1000 genomes]
rs55957619	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56083792	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7077944	0.87[ASN][1000 genomes]
rs7914581	0.93[ASN][1000 genomes]
rs7921200	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs884665	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11598299	TMEM26	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
2	chr10:61345400-61347800	Enhancers	Esophagus	oesophagus
3	chr10:61345400-61348000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:61345400-61348400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:61345600-61349200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:61346000-61347800	Enhancers	NHEK	skin
8	chr10:61346600-61347800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:61346600-61347800	Enhancers	HMEC	breast
10	chr10:61346600-61348000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:61347200-61347600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:61347400-61347600	Enhancers	Brain Anterior Caudate	brain
13	chr10:61347400-61347800	Enhancers	Ovary	ovary

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