Variant report

Variant	rs10826322
Chromosome Location	chr10:61341519-61341520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509110	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826323	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006576	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006585	0.99[ASN][1000 genomes]
rs11006590	0.86[CHB][hapmap]
rs11006595	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006597	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006608	0.89[ASN][1000 genomes]
rs11598299	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11815662	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11819306	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11819752	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16913818	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913821	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909635	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909638	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3956825	0.92[ASN][1000 genomes]
rs4519044	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948235	0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4948343	0.89[ASN][1000 genomes]
rs4948344	0.89[ASN][1000 genomes]
rs55957619	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083792	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077944	0.87[ASN][1000 genomes]
rs7914581	0.94[ASN][1000 genomes]
rs7921200	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884665	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10826322	TMEM26	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61339000-61341600	Enhancers	Duodenum Smooth Muscle	Duodenum
2	chr10:61340000-61341600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:61340000-61341800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:61340000-61341800	Weak transcription	Brain Substantia Nigra	brain
5	chr10:61340000-61342600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:61340200-61341600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:61340200-61341800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:61340200-61341800	Weak transcription	Brain Anterior Caudate	brain
9	chr10:61340200-61341800	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:61340200-61342600	Weak transcription	Fetal Lung	lung
11	chr10:61340200-61342600	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
14	chr10:61340400-61342400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:61341000-61346000	Enhancers	Colon Smooth Muscle	Colon
16	chr10:61341400-61341600	Enhancers	Brain Germinal Matrix	brain
17	chr10:61341400-61342200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:61341400-61342400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:61341400-61343000	Enhancers	Brain Angular Gyrus	brain

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