Variant report

Variant	rs11024073
Chromosome Location	chr11:16914493-16914494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16901136..16902901-chr11:16914387..16916198,2	K562	blood:
2	chr11:16912383..16915251-chr11:16918244..16921230,3	K562	blood:
3	chr11:16912383..16915657-chr11:16918244..16920114,3	K562	blood:
4	chr11:16910866..16914588-chr11:16915188..16918653,3	MCF-7	breast:
5	chr11:16913445..16915205-chr11:17097801..17099335,3	MCF-7	breast:
6	chr11:16883507..16885093-chr11:16913908..16916539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11024054	0.92[GIH][hapmap];0.84[TSI][hapmap]
rs11024058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222901	0.88[GIH][hapmap];0.84[TSI][hapmap]
rs12223233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223369	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12226273	0.86[CEU][hapmap];0.85[CHB][hapmap]
rs17698419	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17772101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756871	0.86[CEU][hapmap]
rs4757441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55814202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61496580	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16910000-16917800	Weak transcription	Lung	lung
2	chr11:16911200-16916000	Enhancers	Stomach Mucosa	stomach
3	chr11:16911600-16914800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:16912200-16923600	Weak transcription	A549	lung
5	chr11:16912400-16919400	Weak transcription	Liver	Liver
6	chr11:16912600-16915600	Enhancers	NHDF-Ad	bronchial
7	chr11:16912600-16915800	Enhancers	HMEC	breast
8	chr11:16912600-16916000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:16912600-16916000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:16912800-16914600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:16912800-16915600	Enhancers	Osteobl	bone
12	chr11:16913000-16918400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:16913200-16914600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:16913200-16914600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:16913400-16916800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:16913600-16915000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:16913600-16915200	Weak transcription	Spleen	Spleen
18	chr11:16913600-16916000	Enhancers	Pancreas	Pancrea
19	chr11:16913600-16916200	Enhancers	Left Ventricle	heart
20	chr11:16913800-16914800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:16913800-16915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:16913800-16915000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:16913800-16915000	Weak transcription	Adipose Nuclei	Adipose
24	chr11:16913800-16915000	Weak transcription	Esophagus	oesophagus
25	chr11:16913800-16916400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:16913800-16921800	Enhancers	Fetal Heart	heart
27	chr11:16914000-16915000	Weak transcription	Placenta	Placenta
28	chr11:16914000-16915200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:16914000-16917000	Weak transcription	HSMM	muscle
30	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
31	chr11:16914200-16916000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:16914400-16914600	Enhancers	Right Atrium	heart
33	chr11:16914400-16914800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:16914400-16915200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:16914400-16915600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:16914400-16916000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr11:16914400-16916200	Enhancers	Gastric	stomach
38	chr11:16914400-16919200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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