Variant report

Variant	rs17772101
Chromosome Location	chr11:16896925-16896926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11024058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024069	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024071	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223233	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12223369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12226273	0.87[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17698419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756868	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4756871	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4757441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55814202	0.83[AMR][1000 genomes]
rs56005045	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61496580	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72864090	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72864092	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72864100	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:16882600-16898400	Weak transcription	Ovary	ovary
4	chr11:16884600-16897600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:16884800-16897600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:16884800-16900000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:16885000-16900200	Weak transcription	Stomach Mucosa	stomach
8	chr11:16885200-16902400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:16885400-16900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:16890200-16897600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:16890400-16899000	Weak transcription	Adipose Nuclei	Adipose
12	chr11:16891000-16900000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:16891000-16900800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:16891000-16901000	Weak transcription	Lung	lung
15	chr11:16891200-16904600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:16891600-16897600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:16891600-16903600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:16891800-16899200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:16892000-16897400	Weak transcription	Placenta	Placenta
20	chr11:16892800-16898400	Enhancers	Fetal Heart	heart
21	chr11:16893000-16897200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:16893400-16897000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:16893400-16897400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:16893400-16901600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:16893400-16902600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:16894200-16897200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:16895000-16898200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:16895200-16897400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:16895200-16897400	Weak transcription	Left Ventricle	heart
30	chr11:16895200-16897800	Weak transcription	Right Ventricle	heart
31	chr11:16895200-16898000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:16895200-16898000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:16895600-16898200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:16895600-16898400	Enhancers	HepG2	liver
35	chr11:16896000-16899400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:16896200-16897400	Enhancers	Esophagus	oesophagus
37	chr11:16896200-16898200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr11:16896400-16897000	Weak transcription	Right Atrium	heart
39	chr11:16896400-16897400	Weak transcription	Pancreas	Pancrea
40	chr11:16896400-16897400	Enhancers	HMEC	breast
41	chr11:16896400-16898000	Weak transcription	Gastric	stomach
42	chr11:16896400-16899400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:16896400-16901800	Weak transcription	Fetal Intestine Large	intestine
44	chr11:16896600-16902400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:16896600-16902600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:16896800-16897000	Weak transcription	Fetal Intestine Small	intestine
47	chr11:16896800-16898400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:16896800-16902600	Weak transcription	HSMMtube	muscle

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