Variant report

Variant	rs61496580
Chromosome Location	chr11:16908952-16908953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11024058	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024059	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024061	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024069	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024071	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024073	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223233	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223369	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17698419	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17772101	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756868	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756870	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757441	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55814202	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72864090	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864092	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864100	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv825770	chr11:16908083-16912537	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16903600-16914400	Weak transcription	Right Atrium	heart
2	chr11:16905200-16909000	Weak transcription	Esophagus	oesophagus
3	chr11:16905200-16909200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:16905200-16909200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:16905200-16913600	Weak transcription	Gastric	stomach
6	chr11:16905200-16913600	Weak transcription	Pancreas	Pancrea
7	chr11:16908000-16911600	Weak transcription	Fetal Heart	heart
8	chr11:16908600-16909000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:16908800-16909400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr11:16908800-16910000	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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