Variant report

Variant	rs11024353
Chromosome Location	chr11:17660104-17660105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17658918..17660836-chr11:17665440..17668031,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11024342	0.84[EUR][1000 genomes]
rs11603536	0.90[EUR][1000 genomes]
rs11604368	0.90[EUR][1000 genomes]
rs11604413	0.90[EUR][1000 genomes]
rs11606130	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11607051	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11607120	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11608226	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16934477	0.86[EUR][1000 genomes]
rs16934481	0.90[EUR][1000 genomes]
rs16934491	0.90[EUR][1000 genomes]
rs55858137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56254591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61743165	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102480	0.90[EUR][1000 genomes]
rs7112749	0.90[EUR][1000 genomes]
rs7117519	0.90[EUR][1000 genomes]
rs7117645	0.90[EUR][1000 genomes]
rs7118411	0.90[EUR][1000 genomes]
rs7118838	0.90[EUR][1000 genomes]
rs7127953	1.00[EUR][1000 genomes]
rs740324	0.90[EUR][1000 genomes]
rs7949484	0.90[EUR][1000 genomes]
rs7949599	0.90[EUR][1000 genomes]
rs7949897	0.90[EUR][1000 genomes]
rs7950303	0.81[EUR][1000 genomes]
rs875695	0.90[EUR][1000 genomes]
rs875696	0.90[EUR][1000 genomes]
rs9666496	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv897023	chr11:17617468-17667561	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv897024	chr11:17617468-17692011	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17653800-17668600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:17655600-17666800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links