Variant report
| Variant | rs11604368 |
|---|---|
| Chromosome Location | chr11:17611269-17611270 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:17611206..17613431-chr11:17997652..17999714,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11024353 | 0.90[EUR][1000 genomes] |
| rs11603536 | 1.00[EUR][1000 genomes] |
| rs11604413 | 1.00[EUR][1000 genomes] |
| rs11606130 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs11607051 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs11607120 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs11608226 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs16934477 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs16934481 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16934491 | 1.00[EUR][1000 genomes] |
| rs55858137 | 0.90[EUR][1000 genomes] |
| rs56254591 | 0.90[EUR][1000 genomes] |
| rs61743165 | 0.90[EUR][1000 genomes] |
| rs7102480 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7112749 | 1.00[EUR][1000 genomes] |
| rs7117519 | 1.00[EUR][1000 genomes] |
| rs7117645 | 1.00[EUR][1000 genomes] |
| rs7118411 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7118838 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7127953 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs740324 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7949484 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7949599 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7949897 | 1.00[EUR][1000 genomes] |
| rs7950303 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs875695 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs875696 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040065 | chr11:17556031-17753467 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044126 | chr11:17557715-17730646 | Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv540953 | chr11:17557715-17730646 | Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:17610600-17612800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
