Variant report

Variant	rs11608226
Chromosome Location	chr11:17654437-17654438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17652629..17655545-chr17:62222984..62224755,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266402	Chromatin interaction
ENSG00000199753	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11024342	0.84[EUR][1000 genomes]
rs11024353	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11603536	0.90[EUR][1000 genomes]
rs11604368	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11604413	0.90[EUR][1000 genomes]
rs11606130	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607051	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607120	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934477	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16934481	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16934491	0.90[EUR][1000 genomes]
rs55858137	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56254591	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61743165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102480	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7112749	0.90[EUR][1000 genomes]
rs7117519	0.90[EUR][1000 genomes]
rs7117645	0.90[EUR][1000 genomes]
rs7118411	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7118838	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7127953	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs740324	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7949484	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7949599	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7949897	0.90[EUR][1000 genomes]
rs7950303	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs875695	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs875696	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9666496	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv469938	chr11:17615203-17656148	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv467715	chr11:17615655-17656148	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv553587	chr11:17615655-17656148	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv897023	chr11:17617468-17667561	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv897024	chr11:17617468-17692011	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv520453	chr11:17625278-17656148	Enhancers Genic enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17653800-17655200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:17653800-17668600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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