Variant report

Variant	rs7117519
Chromosome Location	chr11:17593273-17593274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1003490	1.00[JPT][hapmap]
rs10741730	1.00[JPT][hapmap]
rs10832807	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11024330	1.00[JPT][hapmap]
rs11024345	1.00[JPT][hapmap]
rs11024348	0.82[JPT][hapmap]
rs11024349	1.00[JPT][hapmap]
rs11024353	0.90[EUR][1000 genomes]
rs11603536	1.00[EUR][1000 genomes]
rs11604368	1.00[EUR][1000 genomes]
rs11604413	1.00[EUR][1000 genomes]
rs11605447	1.00[ASN][1000 genomes]
rs11606130	0.90[EUR][1000 genomes]
rs11607051	0.90[EUR][1000 genomes]
rs11607120	0.90[EUR][1000 genomes]
rs11608226	0.90[EUR][1000 genomes]
rs12277962	1.00[JPT][hapmap]
rs12361934	1.00[JPT][hapmap]
rs16934477	0.95[EUR][1000 genomes]
rs16934481	1.00[EUR][1000 genomes]
rs16934491	1.00[EUR][1000 genomes]
rs2058003	0.82[JPT][hapmap]
rs55858137	0.90[EUR][1000 genomes]
rs56254591	0.90[EUR][1000 genomes]
rs61743165	0.90[EUR][1000 genomes]
rs7102480	1.00[EUR][1000 genomes]
rs7110462	1.00[JPT][hapmap]
rs7112338	1.00[JPT][hapmap]
rs7112749	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117645	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7118411	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7118838	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127953	0.90[EUR][1000 genomes]
rs7129066	1.00[JPT][hapmap]
rs740324	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944460	0.86[ASN][1000 genomes]
rs7948744	0.82[JPT][hapmap]
rs7949484	0.82[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7949599	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950303	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875695	1.00[EUR][1000 genomes]
rs875696	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv7693	chr11:17556788-17601771	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv553586	chr11:17559018-17599093	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv14476	chr11:17593003-17594228	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17574400-17596200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:17593200-17594400	Enhancers	Fetal Heart	heart

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