Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:17612630..17615852-chr11:17618211..17621966,5	K562	blood:
2	chr11:17614764..17616023-chr11:17751704..17752684,3	MCF-7	breast:
3	chr11:17614076..17616630-chr11:18008858..18011445,2	K562	blood:
4	chr11:17605717..17608224-chr11:17613045..17615760,2	K562	blood:
5	chr11:17613851..17615852-chr11:17618266..17620129,2	K562	blood:

Variant related genes	Relation type
ENSG00000129158	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11024353	0.90[EUR][1000 genomes]
rs11603536	1.00[EUR][1000 genomes]
rs11604368	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604413	1.00[EUR][1000 genomes]
rs11606130	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11607051	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11607120	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11608226	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16934477	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16934481	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16934491	1.00[EUR][1000 genomes]
rs55858137	0.90[EUR][1000 genomes]
rs56254591	0.90[EUR][1000 genomes]
rs61743165	0.90[EUR][1000 genomes]
rs7102480	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7112749	1.00[EUR][1000 genomes]
rs7117519	1.00[EUR][1000 genomes]
rs7117645	1.00[EUR][1000 genomes]
rs7118411	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118838	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7127953	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs740324	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7949484	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7949599	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7949897	1.00[EUR][1000 genomes]
rs7950303	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs875695	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv469938	chr11:17615203-17656148	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs875696	IGFBP2	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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