Variant report

Variant	rs1107479
Chromosome Location	chr12:57030686-57030687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr12:57030233-57031115	K562	blood:	n/a	chr12:57030641-57030648
2	TAF1	chr12:57030570-57031022	H1-hESC	embryonic stem cell:	n/a	n/a
3	SIX5	chr12:57029647-57031447	A549	lung:	n/a	n/a
4	RAD21	chr12:57030287-57031163	IMR90	lung:	n/a	chr12:57030976-57030995 chr12:57030616-57030635
5	BCLAF1	chr12:57030235-57031369	K562	blood:	n/a	chr12:57030422-57030431
6	CTCF	chr12:57030253-57031180	K562	blood:	n/a	chr12:57030975-57030993 chr12:57030618-57030636 chr12:57030978-57030991 chr12:57030762-57030771 chr12:57030762-57030775 chr12:57030976-57030992
7	POLR2A	chr12:57029843-57031518	ECC-1	luminal epithelium:	n/a	n/a
8	MAX	chr12:57029608-57031165	MCF-7	breast:	n/a	n/a
9	CEBPD	chr12:57030503-57031003	HepG2	liver:	n/a	n/a
10	BRCA1	chr12:57030084-57031190	HepG2	liver:	n/a	n/a
11	MBD4	chr12:57030285-57031170	HepG2	liver:	n/a	n/a
12	USF2	chr12:57030400-57031095	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr12:57028013-57031100	GM19193	blood:	n/a	n/a
14	FOXA1	chr12:57030558-57031084	HepG2	liver:	n/a	n/a
15	MAX	chr12:57030201-57030979	HepG2	liver:	n/a	n/a
16	MAX	chr12:57029338-57031254	A549	lung:	n/a	n/a
17	STAT5A	chr12:57030190-57031310	K562	blood:	n/a	chr12:57030387-57030399
18	YY1	chr12:57030226-57031034	NT2-D1	testis:	n/a	n/a
19	SIN3AK20	chr12:57030480-57031027	HepG2	liver:	n/a	n/a
20	CTCF	chr12:57030560-57030710	HMF	breast:	n/a	chr12:57030618-57030636
21	FOXP2	chr12:57030477-57031104	SK-N-MC	brain:	n/a	n/a
22	TAF1	chr12:57030629-57031045	PFSK-1	brain:	n/a	n/a
23	STAT5A	chr12:57030119-57031294	GM12878	blood:	n/a	chr12:57030181-57030193 chr12:57030169-57030181 chr12:57030387-57030399
24	POLR2A	chr12:57030401-57031116	H1-hESC	embryonic stem cell:	n/a	n/a
25	YY1	chr12:57029985-57031111	A549	lung:	n/a	n/a
26	SIN3AK20	chr12:57029304-57031410	K562	blood:	n/a	n/a
27	CTCF	chr12:57030580-57030730	BE2_C	brain:	n/a	chr12:57030618-57030636
28	SMC3	chr12:57030338-57031168	K562	blood:	n/a	chr12:57030977-57030991 chr12:57030620-57030634
29	POLR2A	chr12:57027544-57032262	GM12878	blood:	n/a	n/a
30	CTCF	chr12:57030540-57030690	HepG2	liver:	n/a	chr12:57030618-57030636
31	MAFF	chr12:57029759-57031314	K562	blood:	n/a	chr12:57029892-57029910 chr12:57029898-57029912
32	REST	chr12:57030499-57031163	HepG2	liver:	n/a	n/a
33	CTCF	chr12:57030335-57031282	MCF-7	breast:	n/a	chr12:57030975-57030993 chr12:57030618-57030636 chr12:57030978-57030991 chr12:57030762-57030771 chr12:57030762-57030775 chr12:57030976-57030992
34	CTCF	chr12:57030560-57030710	SK-N-SH_RA	brain:	n/a	chr12:57030618-57030636
35	CTCF	chr12:57030580-57030730	HUVEC	blood vessel:	n/a	chr12:57030618-57030636
36	CTCF	chr12:57030580-57030730	WI-38	lung:	n/a	chr12:57030618-57030636
37	POLR2A	chr12:57030490-57031090	SK-N-SH	brain:	n/a	n/a
38	PAX5	chr12:57030433-57030872	GM12878	blood:	n/a	chr12:57030533-57030542
39	POLR2A	chr12:57029658-57031385	K562	blood:	n/a	n/a
40	ZNF263	chr12:57027959-57031195	HEK293-T-REx	kidney:	n/a	chr12:57028803-57028812 chr12:57030173-57030182 chr12:57028905-57028926 chr12:57029526-57029535 chr12:57029681-57029690 chr12:57030212-57030221 chr12:57028416-57028425 chr12:57028837-57028846 chr12:57030853-57030862
41	POLR2A	chr12:57029866-57031323	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr12:57029852-57031147	IMR90	lung:	n/a	n/a
43	CTCF	chr12:57030540-57030690	GM12866	blood:	n/a	chr12:57030618-57030636
44	JUND	chr12:57030536-57030965	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr12:57030506-57030780	MCF-7	breast:	n/a	chr12:57030618-57030636 chr12:57030762-57030771 chr12:57030762-57030775
46	TBL1XR1	chr12:57029836-57031209	K562	blood:	n/a	n/a
47	ELF1	chr12:57030287-57031254	MCF-7	breast:	n/a	n/a
48	POLR2A	chr12:57027996-57031055	GM18951	blood:	n/a	n/a
49	POLR2A	chr12:57027904-57031360	GM12878	blood:	n/a	n/a
50	CEBPB	chr12:57030431-57031402	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:57030659-57030709	T-47D	breast:	n/a
2	chr12:57030659-57030709	K562	blood:	n/a
3	chr12:57030659-57030709	AG10803	skin:	n/a
4	chr12:57030659-57030709	U87	brain:	n/a
5	chr12:57030659-57030709	HCPEpiC	choroid plexus:	n/a
6	chr12:57030659-57030709	SAEC	small airway:	n/a
7	chr12:57030659-57030709	HRCEpiC	kidney:	n/a
8	chr12:57030659-57030709	GM19239	blood:	n/a
9	chr12:57030659-57030709	PrEC	prostate:	n/a
10	chr12:57030659-57030709	HepG2	liver:	n/a
11	chr12:57030659-57030709	HEK293	kidney:	embryo
12	chr12:57030659-57030709	Jurkat	blood:	n/a
13	chr12:57030659-57030709	HUVEC	blood vessel:	n/a
14	chr12:57030659-57030709	HRE	kidney:	n/a
15	chr12:57030659-57030709	Hepatocyte	liver:	n/a
16	chr12:57030659-57030709	BE2_C	brain:	n/a
17	chr12:57030659-57030709	HCM	heart:	n/a
18	chr12:57030659-57030709	AG04450	lung:	fetal
19	chr12:57030659-57030709	PANC-1	pancreas:	n/a
20	chr12:57030659-57030709	SK-N-MC	brain:	n/a
21	chr12:57030659-57030709	GM12892	blood:	n/a
22	chr12:57030659-57030709	AoSMC	blood vessel:	n/a
23	chr12:57030659-57030709	HEEpiC	esophagus:	n/a
24	chr12:57030659-57030709	PFSK-1	brain:	n/a
25	chr12:57030659-57030709	ProgFib	skin:	n/a
26	chr12:57030659-57030709	H1-hESC	embryonic stem cell:	embryo
27	chr12:57030659-57030709	NB4	blood:	n/a
28	chr12:57030659-57030709	Caco-2	colon:	n/a
29	chr12:57030659-57030709	SKMC	muscle:	n/a
30	chr12:57030659-57030709	HCT-116	colon:	n/a
31	chr12:57030659-57030709	CMK	blood:	n/a
32	chr12:57030659-57030709	AG09319	gingival:	n/a
33	chr12:57030659-57030709	NT2-D1	testis:	n/a
34	chr12:57030659-57030709	IMR90	lung:	fetal
35	chr12:57030659-57030709	ovcar-3	ovarian:	n/a
36	chr12:57030659-57030709	HCF	heart:	n/a
37	chr12:57030659-57030709	RPTEC	kidney:	n/a
38	chr12:57030659-57030709	HIPEpiC	eye:	n/a
39	chr12:57030659-57030709	HRPEpiC	eye:	n/a
40	chr12:57030659-57030709	Hela-S3	cervix:	n/a
41	chr12:57030659-57030709	AG04449	skin:	fetal
42	chr12:57030659-57030709	NHDF-neo	bronchial:	n/a
43	chr12:57030659-57030709	MCF10A-Er-Src	breast:	n/a
44	chr12:57030659-57030709	SK-N-SH	brain:	n/a
45	chr12:57030659-57030709	NH-A	brain:	n/a
46	chr12:57030659-57030709	NHBE	bronchial:	n/a
47	chr12:57030659-57030709	HL-60	blood:	n/a
48	chr12:57030659-57030709	HNPCEpiC	eye:	n/a
49	chr12:57030659-57030709	ECC-1	luminal epithelium:	n/a
50	chr12:57030659-57030709	GM12878	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:57026160..57032326-chr12:57079667..57084551,17	K562	blood:
2	chr12:56726222..56728684-chr12:57029167..57031416,2	K562	blood:
3	chr12:56519055..56522038-chr12:57029162..57030731,2	K562	blood:
4	chr12:57029847..57032338-chr12:57145228..57146729,2	MCF-7	breast:
5	chr12:56708298..56710997-chr12:57029134..57031889,3	MCF-7	breast:
6	chr12:57027161..57032164-chr12:57080546..57084524,13	MCF-7	breast:
7	chr12:56992973..56997884-chr12:57027374..57031905,8	K562	blood:
8	chr12:57026457..57031197-chr12:57479410..57483153,5	MCF-7	breast:
9	chr12:57027023..57035553-chr12:57079936..57085201,18	MCF-7	breast:
10	chr12:57028651..57034442-chr12:57080412..57084452,17	K562	blood:
11	chr12:56551730..56554656-chr12:57027945..57032236,3	K562	blood:
12	chr12:56995113..56995947-chr12:57030215..57031100,3	MCF-7	breast:
13	chr12:57022951..57032187-chr12:57113330..57121462,17	K562	blood:
14	chr12:56753830..56756625-chr12:57028420..57030715,2	MCF-7	breast:
15	chr12:57029325..57031901-chr12:57117186..57120147,2	K562	blood:
16	chr12:57028905..57032364-chr12:57143305..57146712,4	K562	blood:
17	chr12:56995143..56995846-chr12:57030393..57030919,3	MCF-7	breast:
18	chr12:56997043..57002825-chr12:57025405..57031317,7	MCF-7	breast:
19	chr12:57026523..57033046-chr12:57115223..57120839,17	MCF-7	breast:
20	chr12:56993930..56997262-chr12:57028560..57031023,3	K562	blood:
21	chr12:57028511..57031502-chr12:57144814..57146323,2	MCF-7	breast:
22	chr12:57030574..57031167-chr12:57081950..57082884,2	K562	blood:
23	chr12:57029241..57032243-chr12:57118930..57120997,3	MCF-7	breast:
24	chr12:57007109..57010688-chr12:57028709..57032558,4	K562	blood:
25	chr12:56994912..56995832-chr12:57030223..57031358,3	K562	blood:

Variant related genes	Relation type
BAZ2A	TF binding region
BAZ2A	CpG island
ENSG00000144785	Chromatin interaction
ENSG00000257727	Chromatin interaction
ENSG00000092841	Chromatin interaction
ENSG00000076108	Chromatin interaction
ENSG00000139641	Chromatin interaction
ENSG00000175336	Chromatin interaction
ENSG00000110958	Chromatin interaction
ENSG00000135473	Chromatin interaction
ENSG00000198056	Chromatin interaction
ENSG00000166881	Chromatin interaction
ENSG00000166886	Chromatin interaction
ENSG00000257809	Chromatin interaction
ENSG00000196531	Chromatin interaction
ENSG00000025423	Chromatin interaction
ENSG00000170581	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1020848	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026565	0.94[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.81[GIH][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap]
rs10450	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs10747769	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10783794	0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10876913	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10876914	1.00[ASN][1000 genomes]
rs10876915	1.00[ASN][1000 genomes]
rs10876916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11171914	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11171916	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11171917	1.00[ASN][1000 genomes]
rs11171951	0.95[CEU][hapmap];0.93[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs11835120	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837319	1.00[ASN][1000 genomes]
rs12229457	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465081	1.00[ASN][1000 genomes]
rs1466382	0.94[ASW][hapmap];0.83[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];0.93[YRI][hapmap]
rs1563896	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1563897	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1962963	0.88[ASN][1000 genomes]
rs1979325	0.93[CHB][hapmap]
rs2035081	0.95[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap]
rs2255074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2290893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2290894	0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[YRI][hapmap]
rs2926740	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926741	0.95[CEU][hapmap];0.93[CHB][hapmap];0.92[YRI][hapmap]
rs2926743	0.93[CHB][hapmap];0.81[CHD][hapmap]
rs2950387	0.87[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2950388	1.00[ASN][1000 genomes]
rs2950389	0.90[JPT][hapmap]
rs2950390	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950393	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950394	1.00[ASN][1000 genomes]
rs2958123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2958124	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2958127	0.95[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs2958130	0.95[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap]
rs2958145	1.00[ASN][1000 genomes]
rs2958146	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2958148	0.94[CEU][hapmap];0.83[YRI][hapmap]
rs2958149	0.87[CHB][hapmap]
rs2958153	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2958154	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2958155	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3214051	0.94[ASW][hapmap];0.95[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap]
rs36012661	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4759028	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4759254	0.87[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs67046307	1.00[ASN][1000 genomes]
rs7295862	1.00[CEU][hapmap]
rs7297289	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7303216	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7313074	0.93[CHB][hapmap];0.81[CHD][hapmap]
rs7315472	1.00[ASN][1000 genomes]
rs73337030	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957300	0.81[EUR][1000 genomes]
rs7967600	0.95[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap]
rs7972420	0.95[ASN][1000 genomes]
rs7973157	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975783	0.94[ASN][1000 genomes]
rs7978685	0.93[CHB][hapmap];0.81[CHD][hapmap]
rs7980317	0.95[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap]
rs7980378	0.94[ASN][1000 genomes]
rs7980835	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs898609	0.95[CEU][hapmap];0.93[CHB][hapmap]
rs898611	0.95[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap]
rs9368	0.81[CHB][hapmap];0.85[GIH][hapmap]
rs941207	0.93[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs941209	0.84[JPT][hapmap]
rs9634246	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9634247	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9634277	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9989034	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs1107479	PRIM1	cis	cerebellum	SCAN
rs1107479	HSD17B6	cis	cerebellum	SCAN
rs1107479	RAB5B	cis	cerebellum	SCAN
rs1107479	CELA1	cis	cerebellum	SCAN
rs1107479	IL23A	cis	cerebellum	SCAN
rs1107479	PRIM1	cis	parietal	SCAN
rs1107479	HOXC6	cis	cerebellum	SCAN
rs1107479	STAT6	cis	parietal	SCAN
rs1107479	OR10A7	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57025400-57031400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:57026400-57030800	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr12:57026600-57031200	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr12:57027200-57031200	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr12:57027600-57030800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:57027600-57030800	Active TSS	Thymus	Thymus
7	chr12:57027600-57031000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr12:57027800-57030800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr12:57027800-57030800	Flanking Active TSS	Dnd41	blood
10	chr12:57028200-57031000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:57028400-57031000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:57029000-57030800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:57029000-57030800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr12:57029000-57030800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr12:57029000-57030800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr12:57029000-57030800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr12:57029000-57030800	Flanking Active TSS	Placenta	Placenta
18	chr12:57029000-57030800	Flanking Active TSS	Fetal Thymus	thymus
19	chr12:57029000-57031000	Flanking Active TSS	Liver	Liver
20	chr12:57029000-57031000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr12:57029000-57031200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr12:57029000-57031200	Flanking Active TSS	Primary B cells from peripheral blood	blood
23	chr12:57029000-57031200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr12:57029000-57031200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr12:57029000-57031200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr12:57029200-57031000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr12:57029400-57031000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr12:57029400-57031200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:57029600-57030800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr12:57029600-57031000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr12:57029600-57031000	Active TSS	A549	lung
32	chr12:57029800-57030800	Active TSS	Brain Hippocampus Middle	brain
33	chr12:57029800-57031000	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr12:57030000-57031000	Active TSS	Brain Cingulate Gyrus	brain
35	chr12:57030000-57031000	Enhancers	Fetal Heart	heart
36	chr12:57030200-57030800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
37	chr12:57030200-57030800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr12:57030200-57030800	Active TSS	Brain Anterior Caudate	brain
39	chr12:57030200-57030800	Flanking Active TSS	Hela-S3	cervix
40	chr12:57030200-57030800	Flanking Active TSS	NH-A	brain
41	chr12:57030200-57031600	Weak transcription	Lung	lung
42	chr12:57030200-57031600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr12:57030200-57031600	Weak transcription	Spleen	Spleen
44	chr12:57030400-57030800	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr12:57030400-57030800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr12:57030400-57030800	Flanking Active TSS	Rectal Smooth Muscle	rectum
47	chr12:57030400-57031000	Weak transcription	Small Intestine	intestine
48	chr12:57030400-57032400	Weak transcription	Ovary	ovary
49	chr12:57030400-57038600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr12:57030600-57030800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links