Variant report

Variant	rs1563896
Chromosome Location	chr12:57093096-57093097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:57027852..57031737-chr12:57091567..57094568,3	K562	blood:
2	chr12:57091495..57094052-chr12:57115831..57119075,3	K562	blood:
3	chr12:57092980..57095412-chr12:57112114..57114606,2	K562	blood:

Variant related genes	Relation type
ENSG00000196531	Chromatin interaction
ENSG00000076108	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1020848	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1026565	0.85[CEU][hapmap];0.80[CHB][hapmap]
rs10450	0.95[JPT][hapmap]
rs10747769	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10783794	0.95[JPT][hapmap]
rs10783796	0.83[ASN][1000 genomes]
rs10876913	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876914	0.86[ASN][1000 genomes]
rs10876915	0.86[ASN][1000 genomes]
rs10876916	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1107479	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11171914	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11171916	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11171917	0.86[ASN][1000 genomes]
rs11171951	0.84[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs11171956	0.81[ASN][1000 genomes]
rs11835120	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11837319	0.86[ASN][1000 genomes]
rs12229457	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12828563	0.82[ASN][1000 genomes]
rs1465081	0.86[ASN][1000 genomes]
rs1466382	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs1563897	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979325	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs2035081	0.85[CEU][hapmap];0.80[CHB][hapmap];0.83[ASN][1000 genomes]
rs2035082	0.83[ASN][1000 genomes]
rs2255074	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2290893	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2290894	0.86[CEU][hapmap];0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs2926740	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2926741	0.86[CEU][hapmap];0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs2926743	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs2926748	0.83[ASN][1000 genomes]
rs2950387	0.80[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2950388	0.86[ASN][1000 genomes]
rs2950389	0.90[JPT][hapmap]
rs2950390	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2950393	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2950394	0.86[ASN][1000 genomes]
rs2958123	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2958124	0.82[ASN][1000 genomes]
rs2958127	0.85[CEU][hapmap];0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs2958130	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs2958145	0.86[ASN][1000 genomes]
rs2958146	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2958148	0.85[CEU][hapmap];0.81[ASN][1000 genomes]
rs2958149	0.81[CHB][hapmap]
rs2958153	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2958154	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2958155	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3214051	0.85[CEU][hapmap];0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs36012661	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4759028	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4759254	0.85[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4902	0.83[ASN][1000 genomes]
rs67046307	0.86[ASN][1000 genomes]
rs7137749	0.83[ASN][1000 genomes]
rs7295862	0.94[CEU][hapmap]
rs7297289	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7303216	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7313074	0.87[CHB][hapmap]
rs7315472	0.86[ASN][1000 genomes]
rs73337030	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7957300	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7967600	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs7972420	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7973157	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7975783	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7978685	0.87[CHB][hapmap]
rs7980317	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs7980378	0.88[ASN][1000 genomes]
rs7980835	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs898609	0.86[CEU][hapmap];0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs898611	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs941207	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs9634246	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9634247	0.83[ASN][1000 genomes]
rs9634277	0.83[ASN][1000 genomes]
rs9989034	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57083800-57105200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:57084000-57094400	Weak transcription	Fetal Thymus	thymus
3	chr12:57089000-57109600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:57089800-57094400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:57089800-57094400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:57090000-57094400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:57090000-57094400	Weak transcription	Osteobl	bone
8	chr12:57090000-57094800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr12:57090200-57094400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr12:57090200-57094400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr12:57090200-57094400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr12:57090400-57094400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:57090400-57104600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:57090400-57104800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:57092200-57093800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr12:57092400-57094400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr12:57092600-57093200	Enhancers	Primary B cells from cord blood	blood
18	chr12:57092600-57093400	Flanking Active TSS	K562	blood
19	chr12:57092800-57094200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:57092800-57094400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr12:57093000-57093400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:57093000-57093400	Enhancers	Primary hematopoietic stem cells	blood
23	chr12:57093000-57093400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr12:57093000-57095400	Enhancers	Placenta	Placenta

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