The 2.0 version of rSNPBase

Variant report

Variant rs2950394
Chromosome Location chr12:57038332-57038333
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:57030400-57038600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr12:57031400-57038400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr12:57031400-57038400 Strong transcription HUES48 Cell Line embryonic stem cell
4 chr12:57031400-57038400 Strong transcription HUES6 Cell Line embryonic stem cell
5 chr12:57031600-57038400 Strong transcription H1 Cell Line embryonic stem cell
6 chr12:57031600-57038400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr12:57031600-57038400 Strong transcription Lung lung
8 chr12:57031800-57038600 Strong transcription Spleen Spleen
9 chr12:57034600-57038400 Genic enhancers Primary T cells fromperipheralblood blood
10 chr12:57034600-57038800 Weak transcription ES-WA7 Cell Line embryonic stem cell
11 chr12:57035600-57038600 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
12 chr12:57035800-57038400 Strong transcription ES-I3 Cell Line embryonic stem cell
13 chr12:57035800-57038400 Genic enhancers Brain Angular Gyrus brain
14 chr12:57036000-57038400 Genic enhancers Primary T helper naive cells fromperipheralblood blood
15 chr12:57036000-57038400 Genic enhancers Skeletal Muscle Female skeletal muscle
16 chr12:57036000-57039200 Transcr. at gene 5' and 3' GM12878-XiMat blood
17 chr12:57036200-57038400 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr12:57036200-57038400 Genic enhancers Fetal Heart heart
19 chr12:57036400-57038400 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
20 chr12:57036600-57038600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr12:57036800-57038400 Weak transcription Stomach Mucosa stomach
22 chr12:57036800-57040400 Active TSS Right Atrium heart
23 chr12:57037000-57038400 Weak transcription Placenta Amnion Placenta Amnion
24 chr12:57037200-57038400 Genic enhancers iPS-15b Cell Line embryonic stem cell
25 chr12:57037200-57038400 Genic enhancers Primary T regulatory cells fromperipheralblood blood
26 chr12:57037200-57038400 Genic enhancers Brain Anterior Caudate brain
27 chr12:57037200-57038400 Genic enhancers Brain Substantia Nigra brain
28 chr12:57037200-57038400 Genic enhancers Fetal Thymus thymus
29 chr12:57037200-57038400 Genic enhancers Thymus Thymus
30 chr12:57037200-57038400 Genic enhancers NH-A brain
31 chr12:57037200-57038600 Genic enhancers ES-UCSF4 Cell Line embryonic stem cell
32 chr12:57037200-57038600 Genic enhancers Primary B cells from peripheral blood blood
33 chr12:57037200-57038800 Transcr. at gene 5' and 3' Muscle Satellite Cultured Cells --
34 chr12:57037200-57038800 Transcr. at gene 5' and 3' Hela-S3 cervix
35 chr12:57037200-57039000 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
36 chr12:57037200-57039000 Transcr. at gene 5' and 3' A549 lung
37 chr12:57037200-57039200 Transcr. at gene 5' and 3' Rectal Smooth Muscle rectum
38 chr12:57037200-57039200 Transcr. at gene 5' and 3' K562 blood
39 chr12:57037400-57038400 Genic enhancers Primary T killer naive cells fromperipheralblood blood
40 chr12:57037400-57038400 Genic enhancers Adipose Nuclei Adipose
41 chr12:57037400-57038400 Genic enhancers Fetal Intestine Large intestine
42 chr12:57037400-57038400 Genic enhancers NHDF-Ad bronchial
43 chr12:57037400-57038600 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr12:57037400-57038600 Weak transcription Pancreas Pancrea
45 chr12:57037400-57038800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr12:57037400-57038800 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr12:57037400-57038800 Transcr. at gene 5' and 3' Breast Myoepithelial Primary Cells Breast
48 chr12:57037400-57038800 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
49 chr12:57037400-57038800 Transcr. at gene 5' and 3' Duodenum Mucosa Duodenum
50 chr12:57037400-57038800 Transcr. at gene 5' and 3' Duodenum Smooth Muscle Duodenum

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015