Variant report

Variant	rs7315472
Chromosome Location	chr12:57042060-57042061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57041210..57043834-chr12:57056850..57058551,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1020848	1.00[ASN][1000 genomes]
rs10747769	0.94[ASN][1000 genomes]
rs10783794	0.83[ASN][1000 genomes]
rs10876913	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10876914	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10876915	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10876916	0.86[ASN][1000 genomes]
rs1107479	1.00[ASN][1000 genomes]
rs11171914	1.00[ASN][1000 genomes]
rs11171916	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11171917	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11835120	1.00[ASN][1000 genomes]
rs11837319	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12229457	1.00[ASN][1000 genomes]
rs1465081	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563896	0.86[ASN][1000 genomes]
rs1563897	0.86[ASN][1000 genomes]
rs1962963	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1979325	0.81[AMR][1000 genomes]
rs2255074	0.99[ASN][1000 genomes]
rs2256341	0.83[EUR][1000 genomes]
rs2290893	0.92[ASN][1000 genomes]
rs2926740	1.00[ASN][1000 genomes]
rs2926743	0.81[AMR][1000 genomes]
rs2950387	0.93[ASN][1000 genomes]
rs2950388	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950390	1.00[ASN][1000 genomes]
rs2950393	1.00[ASN][1000 genomes]
rs2950394	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2958123	1.00[ASN][1000 genomes]
rs2958124	0.95[ASN][1000 genomes]
rs2958139	0.84[EUR][1000 genomes]
rs2958145	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2958146	1.00[ASN][1000 genomes]
rs2958149	0.81[AMR][1000 genomes]
rs2958153	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2958154	1.00[ASN][1000 genomes]
rs2958155	1.00[ASN][1000 genomes]
rs36012661	1.00[ASN][1000 genomes]
rs4759028	0.91[ASN][1000 genomes]
rs67046307	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297289	0.92[ASN][1000 genomes]
rs7303216	0.92[ASN][1000 genomes]
rs73337030	1.00[ASN][1000 genomes]
rs7972420	0.95[ASN][1000 genomes]
rs7973157	1.00[ASN][1000 genomes]
rs7975783	0.94[ASN][1000 genomes]
rs7978685	0.81[AMR][1000 genomes]
rs7980378	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7980835	0.96[ASN][1000 genomes]
rs941207	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9634246	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634247	0.97[ASN][1000 genomes]
rs9634277	0.97[ASN][1000 genomes]
rs9989034	0.99[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57039800-57055800	Weak transcription	Gastric	stomach
2	chr12:57039800-57059200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:57040400-57045800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:57040400-57046400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:57040400-57056200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr12:57040400-57059200	Weak transcription	Aorta	Aorta
7	chr12:57040400-57059400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr12:57040400-57069400	Weak transcription	Right Atrium	heart
9	chr12:57040600-57044000	Weak transcription	Fetal Thymus	thymus
10	chr12:57040600-57045600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:57040600-57046000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:57040600-57046000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:57040600-57046000	Weak transcription	Spleen	Spleen
14	chr12:57040600-57054600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr12:57040600-57056400	Weak transcription	Brain Substantia Nigra	brain
16	chr12:57040600-57056400	Weak transcription	Colonic Mucosa	Colon
17	chr12:57040600-57056400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr12:57040600-57056800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr12:57040600-57058200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:57040600-57058200	Weak transcription	Colon Smooth Muscle	Colon
21	chr12:57040600-57058800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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