Variant report

Variant	rs73337030
Chromosome Location	chr12:57046194-57046195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1020848	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10747769	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10783794	0.83[ASN][1000 genomes]
rs10876913	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10876914	1.00[ASN][1000 genomes]
rs10876915	1.00[ASN][1000 genomes]
rs10876916	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1107479	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11171914	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11171916	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11171917	1.00[ASN][1000 genomes]
rs11835120	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837319	1.00[ASN][1000 genomes]
rs12229457	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465081	1.00[ASN][1000 genomes]
rs1563896	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1563897	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1962963	0.88[ASN][1000 genomes]
rs2255074	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2290893	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2926740	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950387	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2950388	1.00[ASN][1000 genomes]
rs2950390	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950393	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950394	1.00[ASN][1000 genomes]
rs2958123	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2958124	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2958145	1.00[ASN][1000 genomes]
rs2958146	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2958153	0.91[ASN][1000 genomes]
rs2958154	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2958155	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36012661	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4759028	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67046307	1.00[ASN][1000 genomes]
rs7297289	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7303216	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7315472	1.00[ASN][1000 genomes]
rs7957300	0.82[EUR][1000 genomes]
rs7972420	0.95[ASN][1000 genomes]
rs7973157	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975783	0.94[ASN][1000 genomes]
rs7980378	0.94[ASN][1000 genomes]
rs7980835	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs941207	0.94[ASN][1000 genomes]
rs9634246	1.00[ASN][1000 genomes]
rs9634247	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9634277	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9989034	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57039800-57055800	Weak transcription	Gastric	stomach
2	chr12:57039800-57059200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:57040400-57046400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:57040400-57056200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr12:57040400-57059200	Weak transcription	Aorta	Aorta
6	chr12:57040400-57059400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr12:57040400-57069400	Weak transcription	Right Atrium	heart
8	chr12:57040600-57054600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr12:57040600-57056400	Weak transcription	Brain Substantia Nigra	brain
10	chr12:57040600-57056400	Weak transcription	Colonic Mucosa	Colon
11	chr12:57040600-57056400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr12:57040600-57056800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:57040600-57058200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:57040600-57058200	Weak transcription	Colon Smooth Muscle	Colon
15	chr12:57040600-57058800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr12:57045600-57046200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
17	chr12:57045800-57046200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:57045800-57046200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr12:57046000-57046200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:57046000-57046200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr12:57046000-57046200	Enhancers	Spleen	Spleen

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