Variant report

Variant	rs1107769
Chromosome Location	chr17:66776070-66776071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66775835..66776621-chr17:67231558..67232263,2	MCF-7	breast:
2	chr17:66773647..66776231-chr17:67231747..67233386,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10852756	0.80[AFR][1000 genomes]
rs11653085	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12451027	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12453422	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12453866	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16967220	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28690290	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55734961	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57913837	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59686015	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60787647	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62085642	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62085659	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6501738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213475	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66778800	Weak transcription	HSMMtube	muscle
2	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr17:66770600-66776400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr17:66772600-66777000	Enhancers	Fetal Muscle Leg	muscle
5	chr17:66773200-66780000	Weak transcription	Ovary	ovary
6	chr17:66774000-66776200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr17:66774200-66778800	Weak transcription	Colon Smooth Muscle	Colon
8	chr17:66774400-66778400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr17:66774400-66779000	Weak transcription	Osteobl	bone
10	chr17:66774600-66776400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:66774600-66779200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr17:66774800-66778600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr17:66774800-66778600	Weak transcription	Brain Angular Gyrus	brain
14	chr17:66774800-66779600	Weak transcription	Psoas Muscle	Psoas
15	chr17:66774800-66780000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:66774800-66780000	Weak transcription	Placenta	Placenta
17	chr17:66774800-66780000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr17:66774800-66780000	Weak transcription	NHLF	lung
19	chr17:66775000-66776800	Weak transcription	Brain Anterior Caudate	brain
20	chr17:66775000-66777000	Enhancers	HepG2	liver
21	chr17:66775000-66780000	Weak transcription	Fetal Lung	lung
22	chr17:66775000-66780000	Weak transcription	Right Atrium	heart
23	chr17:66775000-66781800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr17:66775200-66780000	Weak transcription	Fetal Intestine Large	intestine
25	chr17:66775600-66776600	Weak transcription	Brain Hippocampus Middle	brain
26	chr17:66776000-66777000	Enhancers	Adipose Nuclei	Adipose
27	chr17:66776000-66779200	Enhancers	NHDF-Ad	bronchial

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