Variant report

Variant	rs55734961
Chromosome Location	chr17:66787920-66787921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1107769	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11653085	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12451027	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12453422	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12453866	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16967220	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28690290	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57913837	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59686015	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60787647	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62085642	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62085659	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6501738	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7213475	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv526857	chr17:66787428-66789959	Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
4	nsv575927	chr17:66787428-66817866	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:66784800-66789800	Enhancers	HepG2	liver
3	chr17:66785000-66790600	Enhancers	Liver	Liver
4	chr17:66786400-66788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr17:66786400-66788200	Enhancers	Fetal Muscle Leg	muscle
6	chr17:66786400-66791000	Enhancers	Adipose Nuclei	Adipose
7	chr17:66786400-66791000	Enhancers	NHDF-Ad	bronchial
8	chr17:66786400-66791200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr17:66786400-66791800	Enhancers	Fetal Lung	lung
10	chr17:66786400-66791800	Enhancers	NHLF	lung
11	chr17:66786600-66788400	Enhancers	Ovary	ovary
12	chr17:66786600-66791200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr17:66786800-66788000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr17:66786800-66791000	Enhancers	Osteobl	bone
15	chr17:66787000-66788000	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr17:66787000-66788200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr17:66787000-66788200	Enhancers	Primary B cells from peripheral blood	blood
18	chr17:66787000-66791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr17:66787000-66791800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr17:66787200-66788800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr17:66787200-66789200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr17:66787200-66789200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr17:66787200-66789800	Weak transcription	Stomach Mucosa	stomach
24	chr17:66787200-66791800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr17:66787400-66788200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr17:66787600-66788000	Enhancers	Right Atrium	heart
27	chr17:66787800-66788000	Weak transcription	Fetal Intestine Large	intestine
28	chr17:66787800-66788200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr17:66787800-66788200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr17:66787800-66788200	Enhancers	Spleen	Spleen
31	chr17:66787800-66789400	Enhancers	HSMMtube	muscle
32	chr17:66787800-66791600	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links