Variant report

Variant	rs59686015
Chromosome Location	chr17:66781476-66781477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1107769	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11653085	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12451027	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12453422	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12453866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16967220	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28690290	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55734961	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57913837	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60787647	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62085642	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62085659	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6501738	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7213475	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:66775000-66781800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr17:66780400-66786600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr17:66780400-66786800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr17:66780400-66787600	Weak transcription	Right Atrium	heart
6	chr17:66780600-66781800	Weak transcription	Fetal Muscle Leg	muscle
7	chr17:66780800-66786400	Weak transcription	NHDF-Ad	bronchial
8	chr17:66780800-66786600	Weak transcription	Ovary	ovary
9	chr17:66781000-66784800	Weak transcription	HepG2	liver
10	chr17:66781000-66786400	Weak transcription	Adipose Nuclei	Adipose
11	chr17:66781200-66781600	Weak transcription	Fetal Lung	lung
12	chr17:66781200-66781600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr17:66781200-66781600	Weak transcription	HSMMtube	muscle
14	chr17:66781400-66782200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr17:66781400-66782400	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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