Variant report

Variant	rs12453866
Chromosome Location	chr17:66776402-66776403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66775835..66776621-chr17:67231558..67232263,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1107769	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11653085	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12451027	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12453422	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16967220	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28690290	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55734961	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57913837	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59686015	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60787647	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62085642	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62085659	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6501738	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7213475	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66778800	Weak transcription	HSMMtube	muscle
2	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr17:66772600-66777000	Enhancers	Fetal Muscle Leg	muscle
4	chr17:66773200-66780000	Weak transcription	Ovary	ovary
5	chr17:66774200-66778800	Weak transcription	Colon Smooth Muscle	Colon
6	chr17:66774400-66778400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr17:66774400-66779000	Weak transcription	Osteobl	bone
8	chr17:66774600-66779200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr17:66774800-66778600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:66774800-66778600	Weak transcription	Brain Angular Gyrus	brain
11	chr17:66774800-66779600	Weak transcription	Psoas Muscle	Psoas
12	chr17:66774800-66780000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr17:66774800-66780000	Weak transcription	Placenta	Placenta
14	chr17:66774800-66780000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr17:66774800-66780000	Weak transcription	NHLF	lung
16	chr17:66775000-66776800	Weak transcription	Brain Anterior Caudate	brain
17	chr17:66775000-66777000	Enhancers	HepG2	liver
18	chr17:66775000-66780000	Weak transcription	Fetal Lung	lung
19	chr17:66775000-66780000	Weak transcription	Right Atrium	heart
20	chr17:66775000-66781800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr17:66775200-66780000	Weak transcription	Fetal Intestine Large	intestine
22	chr17:66775600-66776600	Weak transcription	Brain Hippocampus Middle	brain
23	chr17:66776000-66777000	Enhancers	Adipose Nuclei	Adipose
24	chr17:66776000-66779200	Enhancers	NHDF-Ad	bronchial
25	chr17:66776200-66779800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr17:66776400-66776800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr17:66776400-66779000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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