Variant report

Variant	rs11653085
Chromosome Location	chr17:66784255-66784256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1107769	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12451027	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12453422	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12453866	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16967220	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28690290	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55734961	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57913837	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59686015	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60787647	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62085642	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62085659	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6501738	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7213475	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:66780400-66786600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:66780400-66786800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr17:66780400-66787600	Weak transcription	Right Atrium	heart
5	chr17:66780800-66786400	Weak transcription	NHDF-Ad	bronchial
6	chr17:66780800-66786600	Weak transcription	Ovary	ovary
7	chr17:66781000-66784800	Weak transcription	HepG2	liver
8	chr17:66781000-66786400	Weak transcription	Adipose Nuclei	Adipose
9	chr17:66782200-66786400	Weak transcription	Fetal Lung	lung
10	chr17:66782200-66786400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr17:66782200-66786600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr17:66784000-66785000	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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