Variant report

Variant	rs11083201
Chromosome Location	chr18:24775819-24775820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24770863..24773354-chr18:24775315..24777406,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11083200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083204	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083206	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11083207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11877546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11877771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12232768	0.84[EUR][1000 genomes]
rs16943380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16943386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60627361	0.84[EUR][1000 genomes]
rs61294946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61399786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61528377	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7239988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73944563	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73944568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73944573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73944574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73944575	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8099642	0.84[EUR][1000 genomes]
rs9635910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909475	chr18:24687324-24776226	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv909476	chr18:24722839-24779601	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24773800-24782800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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