Variant report

Variant	rs61399786
Chromosome Location	chr18:24803577-24803578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr18:24803545-24803770	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr18:24803398-24803822	H1-hESC	embryonic stem cell:	n/a	n/a
3	KAP1	chr18:24803449-24804384	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
ENSG00000265374	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11083200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11083201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11083202	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11083204	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11083205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11083206	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11083207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11877546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11877771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12232768	0.84[EUR][1000 genomes]
rs16943380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16943386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16943399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60627361	0.84[EUR][1000 genomes]
rs61294946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61528377	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7239988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73944563	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73944568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73944573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73944574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73944575	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8099642	0.84[EUR][1000 genomes]
rs9635910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24795600-24803800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:24803200-24804400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr18:24803200-24804800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr18:24803400-24804000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr18:24803400-24804200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:24803400-24804200	Enhancers	Esophagus	oesophagus
7	chr18:24803400-24804400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr18:24803400-24804400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr18:24803400-24804400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr18:24803400-24804400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr18:24803400-24804600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr18:24803400-24804600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr18:24803400-24804800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr18:24803400-24805000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr18:24803400-24808000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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