Variant report

Variant	rs11083204
Chromosome Location	chr18:24777349-24777350
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24770863..24773354-chr18:24775315..24777406,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11083200	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083201	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083205	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083206	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11083207	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11877546	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11877771	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12232768	0.84[EUR][1000 genomes]
rs16943380	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16943386	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943399	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943402	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943407	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60627361	0.84[EUR][1000 genomes]
rs61294946	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61399786	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61528377	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7239988	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73944563	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73944568	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73944573	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73944574	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73944575	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8099642	0.84[EUR][1000 genomes]
rs9635910	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv909476	chr18:24722839-24779601	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24773800-24782800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:24776800-24786400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr18:24777000-24779200	Enhancers	Fetal Intestine Large	intestine
4	chr18:24777200-24779200	Enhancers	Fetal Intestine Small	intestine

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