Variant report

Variant	rs16943407
Chromosome Location	chr18:24834203-24834204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11083200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11083201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11083202	1.00[EUR][1000 genomes]
rs11083204	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11083205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11083206	0.95[EUR][1000 genomes]
rs11083207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11877546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11877771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12232768	0.84[EUR][1000 genomes]
rs16943380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943386	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16943399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16943402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56149331	0.82[AFR][1000 genomes]
rs60627361	0.84[EUR][1000 genomes]
rs61294946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61399786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61528377	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7239988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73944563	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73944568	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73944569	0.97[AFR][1000 genomes]
rs73944572	0.97[AFR][1000 genomes]
rs73944573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73944574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73944575	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8099642	0.84[EUR][1000 genomes]
rs9635910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24834200-24840400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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