Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11083200	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11083201	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11083202	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11083204	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11083205	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11083207	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11877546	0.95[EUR][1000 genomes]
rs11877771	0.95[EUR][1000 genomes]
rs16943380	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16943386	0.95[EUR][1000 genomes]
rs16943399	0.95[EUR][1000 genomes]
rs16943402	0.95[EUR][1000 genomes]
rs16943407	0.95[EUR][1000 genomes]
rs61294946	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61399786	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61528377	0.91[EUR][1000 genomes]
rs7239988	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73944563	0.91[EUR][1000 genomes]
rs73944568	0.95[EUR][1000 genomes]
rs73944573	0.95[EUR][1000 genomes]
rs73944574	0.95[EUR][1000 genomes]
rs73944575	0.90[EUR][1000 genomes]
rs9635910	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv518698	chr18:24779601-24793163	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24773800-24782800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:24776800-24786400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr18:24778200-24781600	Weak transcription	Fetal Stomach	stomach
4	chr18:24779200-24785600	Weak transcription	Fetal Intestine Large	intestine
5	chr18:24779200-24785600	Weak transcription	Fetal Intestine Small	intestine
6	chr18:24779600-24782600	Weak transcription	Muscle Satellite Cultured Cells	--

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