Variant report

Variant	rs11112839
Chromosome Location	chr12:106420444-106420445
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11112835	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11112841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112843	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12369224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7139046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7298311	0.97[EUR][1000 genomes]
rs7313912	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs73192179	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73193807	0.94[EUR][1000 genomes]
rs73193813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7967136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871	chr12:106407516-106429806	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106415600-106421200	Weak transcription	HSMMtube	muscle
2	chr12:106415800-106420600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
4	chr12:106416000-106424200	Weak transcription	Right Atrium	heart
5	chr12:106417000-106421600	Weak transcription	Liver	Liver
6	chr12:106417000-106424000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:106417000-106424200	Weak transcription	Fetal Kidney	kidney
8	chr12:106417200-106421600	Weak transcription	HepG2	liver
9	chr12:106417800-106423000	Weak transcription	HUVEC	blood vessel
10	chr12:106419000-106422800	Weak transcription	A549	lung
11	chr12:106419400-106422800	Weak transcription	HSMM	muscle
12	chr12:106419800-106424000	Weak transcription	NHDF-Ad	bronchial
13	chr12:106420000-106421800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:106420400-106420600	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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