Variant report

Variant	rs7139046
Chromosome Location	chr12:106416095-106416096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11112835	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11112839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112843	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12369224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7298311	0.97[EUR][1000 genomes]
rs7313912	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs73192179	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73193807	0.94[EUR][1000 genomes]
rs73193813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7967136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871	chr12:106407516-106429806	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106413600-106416600	Weak transcription	Pancreas	Pancrea
2	chr12:106414000-106416200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:106414600-106417000	Enhancers	Liver	Liver
4	chr12:106414800-106417000	Enhancers	Fetal Intestine Small	intestine
5	chr12:106415000-106416200	Enhancers	Duodenum Mucosa	Duodenum
6	chr12:106415000-106417200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:106415200-106416200	Weak transcription	Fetal Stomach	stomach
8	chr12:106415200-106416800	Enhancers	Fetal Intestine Large	intestine
9	chr12:106415200-106417000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:106415200-106417000	Enhancers	Fetal Kidney	kidney
11	chr12:106415600-106421200	Weak transcription	HSMMtube	muscle
12	chr12:106415800-106417200	Enhancers	HepG2	liver
13	chr12:106415800-106417800	Enhancers	HUVEC	blood vessel
14	chr12:106415800-106420600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
16	chr12:106416000-106416600	Weak transcription	Right Ventricle	heart
17	chr12:106416000-106417000	Flanking Active TSS	A549	lung
18	chr12:106416000-106424200	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links