Variant report

Variant	rs73192179
Chromosome Location	chr12:106368520-106368521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11112835	1.00[EUR][1000 genomes]
rs11112839	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11112841	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11112843	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11112847	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12298992	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12367590	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12369224	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7139046	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7298311	0.94[EUR][1000 genomes]
rs7313912	0.94[EUR][1000 genomes]
rs73193807	0.97[EUR][1000 genomes]
rs73193813	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7953793	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7967136	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106356000-106376000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:106366000-106371000	Weak transcription	HMEC	breast
3	chr12:106366800-106369000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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