Variant report

Variant	rs7967136
Chromosome Location	chr12:106421115-106421116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106416174..106417913-chr12:106418780..106421309,2	MCF-7	breast:
2	chr12:106413166..106414839-chr12:106421103..106423902,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11112835	0.97[EUR][1000 genomes]
rs11112839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12369224	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7139046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7298311	0.97[EUR][1000 genomes]
rs7313912	0.97[EUR][1000 genomes]
rs73192179	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73193807	0.94[EUR][1000 genomes]
rs73193813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871	chr12:106407516-106429806	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106415600-106421200	Weak transcription	HSMMtube	muscle
2	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
3	chr12:106416000-106424200	Weak transcription	Right Atrium	heart
4	chr12:106417000-106421600	Weak transcription	Liver	Liver
5	chr12:106417000-106424000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:106417000-106424200	Weak transcription	Fetal Kidney	kidney
7	chr12:106417200-106421600	Weak transcription	HepG2	liver
8	chr12:106417800-106423000	Weak transcription	HUVEC	blood vessel
9	chr12:106419000-106422800	Weak transcription	A549	lung
10	chr12:106419400-106422800	Weak transcription	HSMM	muscle
11	chr12:106419800-106424000	Weak transcription	NHDF-Ad	bronchial
12	chr12:106420000-106421800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:106420600-106421200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:106420600-106421600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:106420600-106421600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr12:106420600-106421800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:106420800-106421400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:106420800-106424200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr12:106421000-106421800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:106421000-106421800	Enhancers	Fetal Brain Male	brain
21	chr12:106421000-106423000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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