Variant report

Variant	rs12369224
Chromosome Location	chr12:106417064-106417065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10861542	1.00[MEX][hapmap]
rs11112835	1.00[CEU][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes]
rs11112839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112843	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367009	1.00[MEX][hapmap]
rs12367590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7139046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7298311	0.97[EUR][1000 genomes]
rs7313912	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs73192179	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73193807	0.94[EUR][1000 genomes]
rs73193813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7967136	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871	chr12:106407516-106429806	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106415000-106417200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:106415600-106421200	Weak transcription	HSMMtube	muscle
3	chr12:106415800-106417200	Enhancers	HepG2	liver
4	chr12:106415800-106417800	Enhancers	HUVEC	blood vessel
5	chr12:106415800-106420600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
7	chr12:106416000-106424200	Weak transcription	Right Atrium	heart
8	chr12:106416800-106417200	Weak transcription	Pancreas	Pancrea
9	chr12:106417000-106417800	Enhancers	A549	lung
10	chr12:106417000-106421600	Weak transcription	Liver	Liver
11	chr12:106417000-106424000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr12:106417000-106424200	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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