Variant report

Variant	rs11120459
Chromosome Location	chr1:215176661-215176662
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10864142	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11802559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12067044	0.87[ASN][1000 genomes]
rs12079267	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12084891	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12116663	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1452633	0.99[EUR][1000 genomes]
rs1452635	0.99[EUR][1000 genomes]
rs2198325	0.87[ASN][1000 genomes]
rs2601649	0.83[EUR][1000 genomes]
rs2841617	0.99[EUR][1000 genomes]
rs56257399	0.83[ASN][1000 genomes]
rs6662428	0.97[EUR][1000 genomes]
rs6679757	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs896653	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215174600-215177400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:215174600-215178200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:215174600-215178600	Enhancers	Osteobl	bone
4	chr1:215174800-215176800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:215174800-215176800	Enhancers	NH-A	brain
6	chr1:215174800-215178000	Enhancers	NHDF-Ad	bronchial
7	chr1:215176000-215178600	Weak transcription	HSMM	muscle
8	chr1:215176000-215178800	Weak transcription	HSMMtube	muscle
9	chr1:215176400-215177000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:215176400-215178600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:215176400-215178600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:215176600-215177000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:215176600-215177600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:215176600-215177600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:215176600-215177600	Weak transcription	NHLF	lung
16	chr1:215176600-215177800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:215176600-215178600	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links