Variant report

Variant	rs11139963
Chromosome Location	chr9:85821093-85821094
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10867954	0.81[CHB][hapmap]
rs11139954	0.81[AMR][1000 genomes]
rs11139959	0.81[AMR][1000 genomes]
rs11139965	0.82[AMR][1000 genomes]
rs11139971	0.84[AMR][1000 genomes]
rs11139973	0.81[AMR][1000 genomes]
rs11139975	0.81[CHB][hapmap];0.82[AMR][1000 genomes]
rs11139976	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11139978	0.81[CHB][hapmap]
rs11139983	0.81[CHB][hapmap]
rs11139995	0.84[CHB][hapmap]
rs1323772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17400361	0.81[AMR][1000 genomes]
rs4877745	0.81[CHB][hapmap]
rs58862231	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85817000-85822800	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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