Variant report

Variant	rs4877745
Chromosome Location	chr9:85861086-85861087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85833661..85835663-chr9:85859284..85862101,2	MCF-7	breast:
2	chr9:85856974..85859342-chr9:85860363..85862242,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229109	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10867954	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10867957	0.96[ASN][1000 genomes]
rs11139963	0.81[CHB][hapmap]
rs11139975	0.81[CHB][hapmap]
rs11139976	0.82[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.81[TSI][hapmap];0.83[YRI][hapmap]
rs11139978	0.86[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.94[ASN][1000 genomes]
rs11139983	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11139993	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11139994	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11139995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12006371	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1323772	0.81[CHB][hapmap]
rs4460465	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4877249	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7848774	0.85[GIH][hapmap]
rs7865687	0.83[CEU][hapmap]
rs9777605	0.95[ASN][1000 genomes]
rs9777609	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9777611	0.96[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:85854400-85862800	Weak transcription	Esophagus	oesophagus
4	chr9:85854400-85863000	Weak transcription	Pancreas	Pancrea
5	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
6	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
8	chr9:85854600-85864600	Weak transcription	Fetal Kidney	kidney
9	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
11	chr9:85854800-85862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:85854800-85867400	Weak transcription	HepG2	liver
13	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
15	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
16	chr9:85856000-85866800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr9:85858600-85865600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:85858600-85866400	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:85859000-85862800	Weak transcription	Left Ventricle	heart
21	chr9:85859400-85864200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr9:85861000-85861200	Enhancers	Aorta	Aorta
23	chr9:85861000-85861400	Enhancers	Fetal Heart	heart
24	chr9:85861000-85861400	Enhancers	Psoas Muscle	Psoas
25	chr9:85861000-85861400	Enhancers	Skeletal Muscle Female	skeletal muscle

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