Variant report

Variant	rs11139978
Chromosome Location	chr9:85835853-85835854
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85835103..85836718-chr9:85854833..85857039,2	MCF-7	breast:
2	chr9:85832727..85836639-chr9:86319596..86323973,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135018	Chromatin interaction
ENSG00000254473	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10867954	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.97[ASN][1000 genomes]
rs10867957	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139963	0.81[CHB][hapmap]
rs11139975	0.81[CHB][hapmap]
rs11139976	0.95[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11139983	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139993	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139994	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11139995	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12006371	0.97[ASN][1000 genomes]
rs1323772	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs4460465	0.91[ASN][1000 genomes]
rs4877249	0.86[ASN][1000 genomes]
rs4877745	0.86[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.94[ASN][1000 genomes]
rs7848774	0.91[GIH][hapmap]
rs9777605	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9777609	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9777611	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85834800-85836600	Flanking Active TSS	HUVEC	blood vessel
2	chr9:85835000-85836200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:85835000-85836400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:85835200-85836000	Enhancers	Pancreas	Pancrea
5	chr9:85835200-85836200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:85835200-85836200	Enhancers	Fetal Intestine Large	intestine
7	chr9:85835200-85836200	Enhancers	NHDF-Ad	bronchial
8	chr9:85835200-85836600	Enhancers	NH-A	brain
9	chr9:85835200-85836600	Enhancers	Osteobl	bone
10	chr9:85835200-85836800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:85835200-85836800	Enhancers	Adipose Nuclei	Adipose
12	chr9:85835200-85837400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:85835400-85836000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:85835400-85836200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:85835400-85836200	Enhancers	Fetal Intestine Small	intestine
16	chr9:85835400-85836400	Enhancers	HepG2	liver
17	chr9:85835400-85836600	Enhancers	Stomach Mucosa	stomach
18	chr9:85835400-85836600	Enhancers	HMEC	breast
19	chr9:85835400-85836800	Weak transcription	Left Ventricle	heart
20	chr9:85835400-85836800	Weak transcription	Right Ventricle	heart
21	chr9:85835400-85837400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:85835600-85836000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:85835600-85837200	Enhancers	Fetal Heart	heart
24	chr9:85835800-85836200	Enhancers	Brain Angular Gyrus	brain
25	chr9:85835800-85836200	Flanking Active TSS	Fetal Kidney	kidney

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