Variant report

Variant	rs11139995
Chromosome Location	chr9:85859154-85859155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85856974..85859342-chr9:85860363..85862242,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10867954	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10867957	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139963	0.84[CHB][hapmap]
rs11139975	0.86[CHB][hapmap]
rs11139976	0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11139978	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139983	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139993	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139994	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12006371	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1323772	0.84[CHB][hapmap]
rs4460465	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4877249	0.92[ASN][1000 genomes]
rs4877745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9777605	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9777609	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9777611	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:85851600-85859400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:85854400-85862800	Weak transcription	Esophagus	oesophagus
5	chr9:85854400-85863000	Weak transcription	Pancreas	Pancrea
6	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
7	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
9	chr9:85854600-85864600	Weak transcription	Fetal Kidney	kidney
10	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
12	chr9:85854800-85862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:85854800-85867400	Weak transcription	HepG2	liver
14	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
16	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
17	chr9:85856000-85861000	Weak transcription	Psoas Muscle	Psoas
18	chr9:85856000-85866800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr9:85858200-85861000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:85858600-85860400	Weak transcription	Fetal Brain Female	brain
22	chr9:85858600-85865600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:85858600-85866400	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:85859000-85860000	Enhancers	Fetal Heart	heart
25	chr9:85859000-85862800	Weak transcription	Left Ventricle	heart

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