Variant report

Variant	rs11139983
Chromosome Location	chr9:85846516-85846517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10867954	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10867957	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139963	0.81[CHB][hapmap]
rs11139975	0.81[CHB][hapmap]
rs11139976	0.89[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11139978	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139993	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11139994	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139995	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12006371	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1323772	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs4460465	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4877249	0.89[ASN][1000 genomes]
rs4877745	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7848774	0.91[GIH][hapmap]
rs9777605	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9777609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9777611	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411346	chr9:85846079-85846997	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11139983	FRMD3	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85844200-85850600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:85845400-85846800	Enhancers	Fetal Heart	heart
3	chr9:85845400-85846800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:85845600-85846800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr9:85845800-85846600	Enhancers	Fetal Muscle Leg	muscle
6	chr9:85846000-85846600	Enhancers	Placenta	Placenta
7	chr9:85846200-85846600	Enhancers	Left Ventricle	heart
8	chr9:85846200-85846600	Enhancers	Psoas Muscle	Psoas
9	chr9:85846400-85846600	Enhancers	Right Atrium	heart
10	chr9:85846400-85854000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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