Variant report

Variant	rs9777609
Chromosome Location	chr9:85843489-85843490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10867954	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10867957	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139976	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11139978	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139993	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11139994	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139995	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12006371	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4460465	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4877249	0.89[ASN][1000 genomes]
rs4877745	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9777605	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9777611	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85843400-85843800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr9:85843400-85843800	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr9:85843400-85844000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr9:85843400-85844000	Active TSS	H1 Cell Line	embryonic stem cell
5	chr9:85843400-85844000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr9:85843400-85844000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr9:85843400-85844000	Active TSS	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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