Variant report

Variant	rs11154619
Chromosome Location	chr6:131428095-131428096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11154614	0.87[ASN][1000 genomes]
rs11961521	0.82[ASN][1000 genomes]
rs12198265	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12665101	0.84[ASN][1000 genomes]
rs12665208	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13192526	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1977744	0.85[ASN][1000 genomes]
rs6908768	0.85[ASN][1000 genomes]
rs72989827	0.87[ASN][1000 genomes]
rs72989829	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1019112	chr6:131409284-131452300	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761029	chr6:131413789-131452312	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016925	chr6:131418532-131452300	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131424000-131428400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:131425200-131428600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:131425600-131428200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:131425600-131428200	Weak transcription	HepG2	liver
5	chr6:131426400-131433600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:131427200-131428400	Enhancers	NH-A	brain
7	chr6:131427400-131428800	Enhancers	Osteobl	bone
8	chr6:131427400-131429400	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:131427400-131429400	Enhancers	HUVEC	blood vessel
10	chr6:131427600-131430600	Enhancers	GM12878-XiMat	blood
11	chr6:131427800-131428400	Enhancers	Fetal Intestine Small	intestine
12	chr6:131427800-131428600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:131427800-131429000	Enhancers	Hela-S3	cervix
14	chr6:131427800-131429400	Enhancers	A549	lung
15	chr6:131427800-131431200	Enhancers	Fetal Intestine Large	intestine
16	chr6:131428000-131428400	Enhancers	NHEK	skin
17	chr6:131428000-131428600	Enhancers	Fetal Stomach	stomach
18	chr6:131428000-131428600	Enhancers	HSMM	muscle
19	chr6:131428000-131428800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:131428000-131428800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:131428000-131428800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:131428000-131428800	Enhancers	NHLF	lung
23	chr6:131428000-131429000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:131428000-131429400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links