Variant report

Variant	rs11154614
Chromosome Location	chr6:131405423-131405424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10499177	0.91[CHB][hapmap]
rs11154619	0.87[ASN][1000 genomes]
rs11961521	0.95[ASN][1000 genomes]
rs11969461	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes]
rs12198265	0.87[ASN][1000 genomes]
rs12527232	0.87[ASN][1000 genomes]
rs12527605	1.00[CHB][hapmap]
rs12528626	0.91[CHB][hapmap]
rs12529894	1.00[CHB][hapmap]
rs12665101	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12665208	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13192526	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13207929	0.92[ASN][1000 genomes]
rs13208091	0.92[ASN][1000 genomes]
rs13209830	0.92[ASN][1000 genomes]
rs1332492	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs1338906	0.92[ASN][1000 genomes]
rs17059852	0.91[CHB][hapmap]
rs17180547	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1855078	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs1977744	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2327006	1.00[CHB][hapmap]
rs34445705	0.92[ASN][1000 genomes]
rs34863373	0.89[ASN][1000 genomes]
rs35273150	0.92[ASN][1000 genomes]
rs3777452	0.91[CHB][hapmap]
rs3798251	0.91[CHB][hapmap]
rs4513821	0.91[CHB][hapmap]
rs6908768	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6923182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6941909	1.00[CHB][hapmap]
rs72987859	0.92[ASN][1000 genomes]
rs72987891	0.92[ASN][1000 genomes]
rs72989827	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989829	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740558	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7743764	0.92[ASN][1000 genomes]
rs9483209	0.81[AFR][1000 genomes]
rs9492762	0.91[CHB][hapmap]
rs9492776	1.00[CHB][hapmap]
rs9492782	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9492784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs9492785	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs9492799	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv10623	chr6:131397221-131418195	Active TSS Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131404800-131405600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:131404800-131405600	Enhancers	Stomach Mucosa	stomach
3	chr6:131404800-131405800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:131405000-131405600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:131405000-131405800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:131405200-131405600	Enhancers	Small Intestine	intestine
7	chr6:131405200-131405800	Enhancers	Fetal Intestine Small	intestine
8	chr6:131405400-131405800	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr6:131405400-131406000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links