Variant report

Variant	rs3777452
Chromosome Location	chr6:131233876-131233877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10499177	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969461	0.91[CHB][hapmap]
rs12527605	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12528626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529894	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12660135	0.91[ASN][1000 genomes]
rs12661651	0.85[CEU][hapmap];0.91[ASN][1000 genomes]
rs12663183	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs1332492	0.91[CHB][hapmap]
rs17059678	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs17059736	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17059852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17832366	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs1855078	0.91[CHB][hapmap]
rs2008593	0.84[CHB][hapmap]
rs2020972	0.84[EUR][1000 genomes]
rs2327006	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs3777464	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs3798251	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4513821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs67836126	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6923182	0.91[CHB][hapmap]
rs6927047	0.82[CHB][hapmap]
rs6941909	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72985722	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72998266	0.95[ASN][1000 genomes]
rs73000206	0.93[ASN][1000 genomes]
rs73000216	0.96[ASN][1000 genomes]
rs73000246	1.00[ASN][1000 genomes]
rs73000272	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915171	0.86[JPT][hapmap]
rs928592	1.00[JPT][hapmap]
rs9321258	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483193	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483194	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483195	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492759	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492763	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492768	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492776	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9492782	0.91[CHB][hapmap]
rs9492784	0.91[CHB][hapmap]
rs9492785	0.91[CHB][hapmap]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
2	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:131209000-131234000	Weak transcription	Fetal Thymus	thymus
4	chr6:131211200-131234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:131211400-131234200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:131215200-131234000	Weak transcription	Primary T cells from cord blood	blood
7	chr6:131215200-131234200	Weak transcription	Thymus	Thymus
8	chr6:131215400-131238200	Weak transcription	Aorta	Aorta
9	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:131222200-131234000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:131222200-131234200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:131222200-131234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:131222200-131236400	Weak transcription	Fetal Lung	lung
14	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
16	chr6:131222400-131238200	Weak transcription	Dnd41	blood
17	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:131222600-131241200	Weak transcription	A549	lung
19	chr6:131224400-131241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:131229400-131234200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:131229400-131234400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
24	chr6:131229600-131234400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:131229600-131234400	Weak transcription	Small Intestine	intestine
26	chr6:131229600-131245400	Weak transcription	NHLF	lung
27	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
28	chr6:131229600-131249600	Weak transcription	Osteobl	bone
29	chr6:131229800-131242400	Weak transcription	HepG2	liver
30	chr6:131230600-131236400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:131233000-131234200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:131233000-131234400	Enhancers	Brain Angular Gyrus	brain
33	chr6:131233000-131234600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:131233000-131234600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:131233000-131234600	Enhancers	Brain Anterior Caudate	brain
36	chr6:131233000-131234600	Enhancers	Brain Hippocampus Middle	brain
37	chr6:131233000-131234600	Enhancers	Brain Substantia Nigra	brain
38	chr6:131233000-131234600	Enhancers	Left Ventricle	heart
39	chr6:131233000-131234800	Enhancers	Brain Cingulate Gyrus	brain
40	chr6:131233000-131234800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr6:131233000-131234800	Enhancers	HSMM	muscle
42	chr6:131233000-131235800	Enhancers	Fetal Muscle Leg	muscle
43	chr6:131233200-131234000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:131233600-131234000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr6:131233600-131234000	Strong transcription	Fetal Stomach	stomach
46	chr6:131233600-131234000	Enhancers	Spleen	Spleen
47	chr6:131233600-131235200	Enhancers	HSMMtube	muscle
48	chr6:131233800-131234000	Enhancers	Ovary	ovary
49	chr6:131233800-131234200	Weak transcription	Lung	lung
50	chr6:131233800-131234400	Enhancers	Duodenum Smooth Muscle	Duodenum

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