Variant report

Variant	rs6941909
Chromosome Location	chr6:131282314-131282315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr6:131282263-131282488	U2OS	brain:	n/a	n/a
2	POLR2A	chr6:131282244-131282744	H1-neurons	neurons:	n/a	n/a
3	WRNIP1	chr6:131282291-131282478	GM12878	blood:	n/a	n/a
4	POU2F2	chr6:131282290-131282653	GM12878	blood:	n/a	chr6:131282417-131282428
5	PAX5	chr6:131282194-131282612	GM12878	blood:	n/a	n/a
6	BCL11A	chr6:131282313-131282550	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
EPB41L2	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10499177	0.90[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11969461	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs12527232	0.83[ASN][1000 genomes]
rs12527605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12528626	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12529894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12660135	0.81[ASN][1000 genomes]
rs12661651	0.81[CEU][hapmap];0.81[ASN][1000 genomes]
rs12663183	0.90[CEU][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1332492	1.00[CHB][hapmap]
rs17059678	0.90[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs17059736	0.90[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs17059852	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17832366	0.89[CEU][hapmap]
rs1855078	1.00[CHB][hapmap]
rs2020972	0.88[EUR][1000 genomes]
rs2327006	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2327007	0.89[ASN][1000 genomes]
rs3777452	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3777464	0.81[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3798251	0.90[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4513821	0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs66491359	0.81[ASN][1000 genomes]
rs67836126	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6923182	1.00[CHB][hapmap]
rs72985722	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72987859	0.84[EUR][1000 genomes]
rs72998266	0.84[ASN][1000 genomes]
rs73000206	0.82[ASN][1000 genomes]
rs73000216	0.86[ASN][1000 genomes]
rs73000246	0.89[ASN][1000 genomes]
rs73000272	0.89[ASN][1000 genomes]
rs928592	0.82[JPT][hapmap]
rs9321258	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs946349	0.89[ASN][1000 genomes]
rs9483193	0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9483194	0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9483195	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492759	0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492762	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492763	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492768	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9492776	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9492782	1.00[CHB][hapmap]
rs9492784	1.00[CHB][hapmap]
rs9492785	1.00[CHB][hapmap]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
3	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
4	chr6:131266000-131283800	Weak transcription	Lung	lung
5	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:131267000-131286000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:131267400-131286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:131267600-131284000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:131267800-131286000	Weak transcription	NHDF-Ad	bronchial
14	chr6:131267800-131288200	Weak transcription	NH-A	brain
15	chr6:131268400-131287200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:131269000-131290400	Weak transcription	Right Ventricle	heart
17	chr6:131269400-131286000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
19	chr6:131272800-131289000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:131274400-131289000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:131275800-131287800	Weak transcription	Fetal Stomach	stomach
22	chr6:131276200-131286000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:131276400-131283000	Weak transcription	Adipose Nuclei	Adipose
24	chr6:131276400-131284000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:131276400-131286800	Weak transcription	Aorta	Aorta
26	chr6:131276400-131288800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:131277000-131286000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:131277000-131288600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:131277400-131290000	Weak transcription	Fetal Intestine Small	intestine
30	chr6:131277600-131283800	Weak transcription	Psoas Muscle	Psoas
31	chr6:131277600-131284000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:131277600-131284000	Weak transcription	Left Ventricle	heart
33	chr6:131277600-131286400	Weak transcription	NHLF	lung
34	chr6:131277600-131287800	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:131277600-131288800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:131277800-131287800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:131280000-131282600	Enhancers	Fetal Lung	lung
38	chr6:131280000-131288200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:131280200-131286000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:131280200-131286200	Weak transcription	Osteobl	bone
41	chr6:131280400-131285800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:131280400-131286200	Weak transcription	HSMM	muscle
43	chr6:131281400-131282400	Weak transcription	Brain Germinal Matrix	brain
44	chr6:131281400-131282400	Weak transcription	Brain Hippocampus Middle	brain
45	chr6:131281400-131286000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:131281400-131287200	Weak transcription	Ovary	ovary
47	chr6:131281800-131282400	Enhancers	Colon Smooth Muscle	Colon
48	chr6:131281800-131286000	Weak transcription	Brain Anterior Caudate	brain
49	chr6:131281800-131288000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:131282000-131282400	Weak transcription	Brain Inferior Temporal Lobe	brain

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