Variant report

Variant	rs12527232
Chromosome Location	chr6:131328618-131328619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11154614	0.87[ASN][1000 genomes]
rs11961521	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11969461	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12527605	0.80[ASN][1000 genomes]
rs12529894	0.83[ASN][1000 genomes]
rs12665101	0.85[ASN][1000 genomes]
rs13207929	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13208091	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13209830	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1332492	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1338906	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17180547	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1855078	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1977744	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2327006	0.82[ASN][1000 genomes]
rs2327007	0.83[ASN][1000 genomes]
rs34445705	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34863373	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35273150	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66491359	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6908768	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6923182	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941909	0.83[ASN][1000 genomes]
rs72985722	0.80[ASN][1000 genomes]
rs72987859	0.95[ASN][1000 genomes]
rs72987891	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72989827	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72989829	0.87[ASN][1000 genomes]
rs7740558	0.91[AFR][1000 genomes]
rs7743764	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7745206	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs946349	0.83[ASN][1000 genomes]
rs9483209	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9492776	0.80[ASN][1000 genomes]
rs9492784	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9492785	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9492799	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131318800-131329200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:131322600-131333200	Weak transcription	Pancreas	Pancrea
3	chr6:131324000-131334200	Weak transcription	Small Intestine	intestine
4	chr6:131326000-131329400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:131326000-131333800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:131327000-131331200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:131327000-131333200	Weak transcription	Ovary	ovary
8	chr6:131327800-131329400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
9	chr6:131327800-131330600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr6:131327800-131331200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:131328000-131328800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:131328000-131329800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:131328000-131329800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
14	chr6:131328000-131329800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:131328000-131329800	ZNF genes & repeats	Brain Substantia Nigra	brain
16	chr6:131328000-131329800	ZNF genes & repeats	Fetal Stomach	stomach
17	chr6:131328000-131330000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:131328000-131330200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr6:131328000-131330200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:131328000-131330200	ZNF genes & repeats	Fetal Muscle Leg	muscle
21	chr6:131328200-131329800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:131328400-131329600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
23	chr6:131328400-131332200	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:131328400-131334800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links