Variant report

Variant	rs1338906
Chromosome Location	chr6:131360062-131360063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131356533..131360824-chr6:131360872..131363958,3	MCF-7	breast:
2	chr6:131356781..131360402-chr6:131360756..131363630,4	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11154614	0.92[ASN][1000 genomes]
rs11961521	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11969461	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12527232	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665101	0.89[ASN][1000 genomes]
rs12665208	0.81[ASN][1000 genomes]
rs13192526	0.81[ASN][1000 genomes]
rs13207929	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208091	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209830	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332492	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17180547	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1855078	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1977744	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34445705	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34863373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35273150	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66491359	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6908768	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6923182	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72987859	1.00[ASN][1000 genomes]
rs72987891	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989827	0.92[ASN][1000 genomes]
rs72989829	0.92[ASN][1000 genomes]
rs7740558	0.81[AMR][1000 genomes]
rs7743764	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745206	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9483209	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9492784	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492785	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492799	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131346000-131375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:131351400-131360200	Weak transcription	Small Intestine	intestine
3	chr6:131351400-131361400	Weak transcription	Psoas Muscle	Psoas
4	chr6:131351400-131375000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:131351600-131360200	Weak transcription	Fetal Stomach	stomach
6	chr6:131351600-131374600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:131352200-131360200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:131352200-131360200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:131352400-131374400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:131353800-131364000	Weak transcription	Ovary	ovary
11	chr6:131356600-131375000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:131357400-131367200	Weak transcription	Fetal Intestine Small	intestine
13	chr6:131358200-131360200	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:131358600-131360800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:131359000-131374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:131359200-131360600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:131359400-131360400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr6:131359400-131360800	Enhancers	Fetal Lung	lung
19	chr6:131359400-131360800	Enhancers	HSMM	muscle
20	chr6:131359600-131360400	Enhancers	Adipose Nuclei	Adipose
21	chr6:131359600-131360600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:131359600-131360800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:131359800-131360200	Flanking Active TSS	HepG2	liver
24	chr6:131359800-131360400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:131359800-131360600	Enhancers	Brain Hippocampus Middle	brain
26	chr6:131359800-131360800	Enhancers	Liver	Liver
27	chr6:131359800-131360800	Enhancers	Brain Anterior Caudate	brain
28	chr6:131359800-131360800	Enhancers	Brain Cingulate Gyrus	brain
29	chr6:131359800-131360800	Enhancers	Fetal Kidney	kidney
30	chr6:131359800-131361000	Enhancers	Brain Substantia Nigra	brain
31	chr6:131359800-131361000	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr6:131359800-131361200	Enhancers	Colon Smooth Muscle	Colon
33	chr6:131360000-131360400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:131360000-131360400	Enhancers	NH-A	brain
35	chr6:131360000-131360600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr6:131360000-131360600	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr6:131360000-131360600	Enhancers	A549	lung
38	chr6:131360000-131360600	Flanking Active TSS	Osteobl	bone
39	chr6:131360000-131360800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:131360000-131360800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr6:131360000-131360800	Enhancers	HSMMtube	muscle
42	chr6:131360000-131360800	Flanking Active TSS	NHDF-Ad	bronchial
43	chr6:131360000-131360800	Flanking Active TSS	NHLF	lung

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