Variant report

Variant	rs9483209
Chromosome Location	chr6:131382819-131382820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11154614	0.81[AFR][1000 genomes]
rs11961521	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11969461	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12527232	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13207929	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13208091	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13209830	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1332492	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1338906	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17180547	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1855078	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1977744	0.94[AFR][1000 genomes]
rs34445705	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34863373	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35273150	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66491359	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6903066	0.85[ASN][1000 genomes]
rs6908768	0.94[AFR][1000 genomes]
rs6923182	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72987891	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72989827	0.87[AFR][1000 genomes]
rs7740558	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7743764	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7745206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9492784	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9492785	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9492799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131380800-131383000	Flanking Active TSS	NHDF-Ad	bronchial
2	chr6:131380800-131383200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:131381000-131383200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:131381600-131383000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:131381600-131383000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr6:131381600-131383000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr6:131381600-131383000	Flanking Active TSS	Osteobl	bone
8	chr6:131381600-131384800	Active TSS	Rectal Smooth Muscle	rectum
9	chr6:131381600-131385000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:131381800-131383000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:131381800-131383000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:131381800-131383600	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr6:131381800-131384600	Active TSS	NHLF	lung
14	chr6:131381800-131384800	Active TSS	Brain Angular Gyrus	brain
15	chr6:131381800-131385000	Active TSS	Ovary	ovary
16	chr6:131381800-131385200	Active TSS	Brain Anterior Caudate	brain
17	chr6:131382000-131384800	Active TSS	A549	lung
18	chr6:131382000-131385000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:131382000-131385000	Active TSS	Brain Substantia Nigra	brain
20	chr6:131382200-131383000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:131382200-131383000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:131382200-131383000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr6:131382200-131383000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
24	chr6:131382200-131383000	Flanking Active TSS	HSMMtube	muscle
25	chr6:131382200-131383200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:131382200-131383200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:131382200-131383200	Flanking Active TSS	NH-A	brain
28	chr6:131382200-131383400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:131382200-131383400	Flanking Active TSS	HMEC	breast
30	chr6:131382200-131383600	Flanking Active TSS	Fetal Muscle Leg	muscle
31	chr6:131382200-131384800	Active TSS	Brain Cingulate Gyrus	brain
32	chr6:131382200-131384800	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr6:131382200-131384800	Active TSS	Fetal Muscle Trunk	muscle
34	chr6:131382200-131385000	Active TSS	Right Atrium	heart
35	chr6:131382200-131385200	Active TSS	Stomach Smooth Muscle	stomach
36	chr6:131382400-131383000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:131382400-131383000	Enhancers	Primary T cells fromperipheralblood	blood
38	chr6:131382400-131383000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr6:131382400-131383000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:131382400-131383000	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr6:131382400-131383000	Flanking Active TSS	Fetal Heart	heart
42	chr6:131382400-131383000	Flanking Active TSS	Fetal Lung	lung
43	chr6:131382400-131383200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:131382400-131383200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:131382400-131383200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
46	chr6:131382400-131383200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
47	chr6:131382400-131383200	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr6:131382400-131383200	Flanking Active TSS	Fetal Stomach	stomach
49	chr6:131382400-131383200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr6:131382400-131383200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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