Variant report

Variant	rs9492784
Chromosome Location	chr6:131344515-131344516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131341511..131345249-chr6:131345439..131348645,4	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10499177	0.91[CHB][hapmap]
rs11154614	0.92[ASN][1000 genomes]
rs11961521	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11969461	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12527232	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12527605	1.00[CHB][hapmap]
rs12528626	0.91[CHB][hapmap]
rs12529894	1.00[CHB][hapmap]
rs12665101	0.89[ASN][1000 genomes]
rs12665208	0.81[ASN][1000 genomes]
rs13192526	0.81[ASN][1000 genomes]
rs13207929	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208091	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209830	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338906	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059678	0.83[CHB][hapmap]
rs17059736	0.91[CHB][hapmap]
rs17059852	0.91[CHB][hapmap]
rs17180547	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1855078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1977744	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2327006	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs34445705	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34863373	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35273150	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777452	0.91[CHB][hapmap]
rs3798251	0.91[CHB][hapmap]
rs4513821	0.91[CHB][hapmap]
rs66491359	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6908768	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6923182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6927047	0.82[CHB][hapmap]
rs6941909	1.00[CHB][hapmap]
rs72987859	1.00[ASN][1000 genomes]
rs72987891	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989827	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs72989829	0.92[ASN][1000 genomes]
rs7740558	0.91[AFR][1000 genomes]
rs7743764	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745206	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9483209	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9492762	0.84[CEU][hapmap];0.91[CHB][hapmap]
rs9492776	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs9492782	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs9492785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492799	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131329800-131347400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:131332200-131345400	Weak transcription	Left Ventricle	heart
3	chr6:131335600-131345200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:131336600-131345200	Weak transcription	Ovary	ovary
5	chr6:131337200-131345000	Weak transcription	Hela-S3	cervix
6	chr6:131337200-131345000	Weak transcription	NHLF	lung
7	chr6:131337400-131347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:131337600-131345200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:131337800-131345000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:131337800-131345000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:131337800-131345200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:131337800-131345400	Weak transcription	Right Atrium	heart
13	chr6:131337800-131351000	Weak transcription	Stomach Mucosa	stomach
14	chr6:131338000-131345000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:131338000-131345000	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:131338000-131345000	Weak transcription	NHDF-Ad	bronchial
17	chr6:131338000-131345200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:131338200-131345200	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:131338200-131345200	Weak transcription	HepG2	liver
20	chr6:131339400-131345000	Weak transcription	Brain Anterior Caudate	brain
21	chr6:131339400-131349400	Weak transcription	Brain Angular Gyrus	brain
22	chr6:131339600-131345000	Weak transcription	A549	lung
23	chr6:131340200-131344800	Weak transcription	HMEC	breast
24	chr6:131341800-131345200	Weak transcription	Brain Substantia Nigra	brain
25	chr6:131343600-131345200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:131343600-131345400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:131344200-131345400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:131344400-131345000	Enhancers	NHEK	skin
29	chr6:131344400-131347600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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